Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0158

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0157 and Psest_0158 are separated by 230 nucleotidesPsest_0158 and Psest_0159 are separated by 3 nucleotidesPsest_0159 and Psest_0160 are separated by 2 nucleotides Psest_0157: Psest_0157 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 155,327 to 156,076 _0157 Psest_0158: Psest_0158 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 156,307 to 157,053 _0158 Psest_0159: Psest_0159 - Uncharacterized protein conserved in bacteria, at 157,057 to 157,848 _0159 Psest_0160: Psest_0160 - C-terminal peptidase (prc), at 157,851 to 159,170 _0160 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1 2 3at 155.368 kb on - strandat 155.438 kb on + strand, within Psest_0157at 155.439 kb on - strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.577 kb on - strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.951 kb on - strand, within Psest_0157at 155.963 kb on + strand, within Psest_0157at 155.964 kb on - strand, within Psest_0157at 156.069 kb on - strandat 156.069 kb on - strandat 156.323 kb on + strandat 156.344 kb on + strandat 156.345 kb on - strandat 156.345 kb on - strandat 156.345 kb on - strandat 156.442 kb on + strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.553 kb on + strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.652 kb on - strand, within Psest_0158at 156.736 kb on + strand, within Psest_0158at 156.736 kb on + strand, within Psest_0158at 156.874 kb on + strand, within Psest_0158at 156.987 kb on - strandat 157.059 kb on - strandat 157.065 kb on - strandat 157.435 kb on + strand, within Psest_0159at 157.435 kb on + strand, within Psest_0159at 157.436 kb on - strand, within Psest_0159at 157.436 kb on - strand, within Psest_0159at 157.537 kb on + strand, within Psest_0159at 157.537 kb on + strand, within Psest_0159at 157.732 kb on + strand, within Psest_0159at 157.790 kb on + strandat 157.791 kb on - strandat 157.792 kb on + strandat 157.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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155,368 - -0.5
155,438 + Psest_0157 0.15 +0.4
155,439 - Psest_0157 0.15 -0.6
155,540 + Psest_0157 0.28 +0.8
155,540 + Psest_0157 0.28 -2.6
155,576 + Psest_0157 0.33 -0.3
155,576 + Psest_0157 0.33 -0.4
155,576 + Psest_0157 0.33 -1.0
155,577 - Psest_0157 0.33 -0.0
155,603 + Psest_0157 0.37 +0.2
155,603 + Psest_0157 0.37 +1.7
155,603 + Psest_0157 0.37 -1.0
155,603 + Psest_0157 0.37 +0.4
155,604 - Psest_0157 0.37 +1.6
155,604 - Psest_0157 0.37 -1.5
155,744 + Psest_0157 0.56 -0.3
155,744 + Psest_0157 0.56 -1.0
155,744 + Psest_0157 0.56 +1.4
155,744 + Psest_0157 0.56 +1.4
155,744 + Psest_0157 0.56 -2.3
155,744 + Psest_0157 0.56 -0.5
155,745 - Psest_0157 0.56 +0.9
155,745 - Psest_0157 0.56 -0.8
155,745 - Psest_0157 0.56 +1.2
155,759 + Psest_0157 0.58 -1.3
155,759 + Psest_0157 0.58 -2.1
155,760 - Psest_0157 0.58 +2.5
155,760 - Psest_0157 0.58 +1.0
155,760 - Psest_0157 0.58 +1.2
155,760 - Psest_0157 0.58 -0.2
155,951 - Psest_0157 0.83 -1.7
155,963 + Psest_0157 0.85 -0.3
155,964 - Psest_0157 0.85 -1.2
156,069 - -0.2
156,069 - -2.7
156,323 + +1.2
156,344 + -0.6
156,345 - +2.3
156,345 - +0.5
156,345 - +3.4
156,442 + Psest_0158 0.18 +0.1
156,443 - Psest_0158 0.18 -1.1
156,443 - Psest_0158 0.18 +0.3
156,443 - Psest_0158 0.18 +1.4
156,443 - Psest_0158 0.18 -0.9
156,553 + Psest_0158 0.33 -0.0
156,554 - Psest_0158 0.33 -1.7
156,554 - Psest_0158 0.33 +0.1
156,554 - Psest_0158 0.33 +0.5
156,652 - Psest_0158 0.46 -1.4
156,736 + Psest_0158 0.57 -0.4
156,736 + Psest_0158 0.57 -1.7
156,874 + Psest_0158 0.76 -0.9
156,987 - +1.0
157,059 - -1.4
157,065 - -0.9
157,435 + Psest_0159 0.48 -0.5
157,435 + Psest_0159 0.48 -0.8
157,436 - Psest_0159 0.48 +0.5
157,436 - Psest_0159 0.48 +1.1
157,537 + Psest_0159 0.61 -0.4
157,537 + Psest_0159 0.61 +0.7
157,732 + Psest_0159 0.85 +1.6
157,790 + +0.4
157,791 - -0.2
157,792 + -0.8
157,793 - +1.7

Or see this region's nucleotide sequence