Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1218

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1217 and Psest_1218 are separated by 170 nucleotidesPsest_1218 and Psest_1219 are separated by 88 nucleotides Psest_1217: Psest_1217 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 1,324,685 to 1,326,145 _1217 Psest_1218: Psest_1218 - Predicted endonuclease containing a URI domain, at 1,326,316 to 1,326,591 _1218 Psest_1219: Psest_1219 - Glutathione S-transferase, at 1,326,680 to 1,327,618 _1219 Position (kb) 1326 1327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1325.332 kb on - strand, within Psest_1217at 1325.358 kb on + strand, within Psest_1217at 1325.514 kb on + strand, within Psest_1217at 1325.514 kb on + strand, within Psest_1217at 1325.514 kb on + strand, within Psest_1217at 1325.515 kb on - strand, within Psest_1217at 1325.775 kb on + strand, within Psest_1217at 1325.776 kb on - strand, within Psest_1217at 1325.776 kb on - strand, within Psest_1217at 1325.785 kb on + strand, within Psest_1217at 1325.985 kb on + strand, within Psest_1217at 1325.985 kb on + strand, within Psest_1217at 1325.986 kb on - strand, within Psest_1217at 1325.986 kb on - strand, within Psest_1217at 1325.986 kb on - strand, within Psest_1217at 1325.986 kb on - strand, within Psest_1217at 1325.989 kb on + strand, within Psest_1217at 1325.989 kb on + strand, within Psest_1217at 1325.990 kb on - strand, within Psest_1217at 1325.990 kb on - strand, within Psest_1217at 1326.035 kb on + strandat 1326.035 kb on + strandat 1326.036 kb on - strandat 1326.037 kb on + strandat 1326.038 kb on - strandat 1326.155 kb on - strandat 1326.156 kb on + strandat 1326.156 kb on + strandat 1326.156 kb on + strandat 1326.157 kb on - strandat 1326.207 kb on - strandat 1326.207 kb on - strandat 1326.228 kb on + strandat 1326.228 kb on + strandat 1326.228 kb on + strandat 1326.229 kb on - strandat 1326.274 kb on - strandat 1326.349 kb on + strand, within Psest_1218at 1326.349 kb on + strand, within Psest_1218at 1326.350 kb on - strand, within Psest_1218at 1326.380 kb on - strand, within Psest_1218at 1326.479 kb on - strand, within Psest_1218at 1326.479 kb on - strand, within Psest_1218at 1326.479 kb on - strand, within Psest_1218at 1326.636 kb on - strandat 1326.659 kb on + strandat 1326.659 kb on + strandat 1326.660 kb on - strandat 1326.862 kb on + strand, within Psest_1219at 1326.866 kb on + strand, within Psest_1219at 1326.866 kb on + strand, within Psest_1219at 1326.866 kb on + strand, within Psest_1219at 1326.866 kb on + strand, within Psest_1219at 1326.867 kb on - strand, within Psest_1219at 1326.867 kb on - strand, within Psest_1219at 1326.867 kb on - strand, within Psest_1219at 1327.157 kb on - strand, within Psest_1219at 1327.157 kb on - strand, within Psest_1219at 1327.157 kb on - strand, within Psest_1219at 1327.515 kb on + strand, within Psest_1219at 1327.516 kb on - strand, within Psest_1219

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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1,325,332 - Psest_1217 0.44 +1.5
1,325,358 + Psest_1217 0.46 -1.8
1,325,514 + Psest_1217 0.57 -2.4
1,325,514 + Psest_1217 0.57 -1.8
1,325,514 + Psest_1217 0.57 -0.1
1,325,515 - Psest_1217 0.57 +0.9
1,325,775 + Psest_1217 0.75 -2.0
1,325,776 - Psest_1217 0.75 -1.4
1,325,776 - Psest_1217 0.75 -1.2
1,325,785 + Psest_1217 0.75 +0.7
1,325,985 + Psest_1217 0.89 -1.6
1,325,985 + Psest_1217 0.89 +2.1
1,325,986 - Psest_1217 0.89 -2.6
1,325,986 - Psest_1217 0.89 -0.6
1,325,986 - Psest_1217 0.89 -1.0
1,325,986 - Psest_1217 0.89 +3.0
1,325,989 + Psest_1217 0.89 +1.8
1,325,989 + Psest_1217 0.89 +1.2
1,325,990 - Psest_1217 0.89 -0.5
1,325,990 - Psest_1217 0.89 -0.3
1,326,035 + +0.1
1,326,035 + +1.2
1,326,036 - -1.4
1,326,037 + -2.1
1,326,038 - +0.7
1,326,155 - -1.2
1,326,156 + -2.5
1,326,156 + +1.1
1,326,156 + -2.0
1,326,157 - -0.5
1,326,207 - +0.1
1,326,207 - +1.7
1,326,228 + +0.3
1,326,228 + +1.3
1,326,228 + +1.4
1,326,229 - +1.2
1,326,274 - +0.5
1,326,349 + Psest_1218 0.12 -0.5
1,326,349 + Psest_1218 0.12 -1.4
1,326,350 - Psest_1218 0.12 -1.5
1,326,380 - Psest_1218 0.23 -0.0
1,326,479 - Psest_1218 0.59 +0.2
1,326,479 - Psest_1218 0.59 -0.2
1,326,479 - Psest_1218 0.59 -0.8
1,326,636 - +1.4
1,326,659 + -0.6
1,326,659 + -1.2
1,326,660 - -0.3
1,326,862 + Psest_1219 0.19 +1.8
1,326,866 + Psest_1219 0.20 +1.5
1,326,866 + Psest_1219 0.20 +0.3
1,326,866 + Psest_1219 0.20 +0.4
1,326,866 + Psest_1219 0.20 -1.1
1,326,867 - Psest_1219 0.20 +1.5
1,326,867 - Psest_1219 0.20 -0.4
1,326,867 - Psest_1219 0.20 +1.6
1,327,157 - Psest_1219 0.51 +1.9
1,327,157 - Psest_1219 0.51 -0.7
1,327,157 - Psest_1219 0.51 +1.5
1,327,515 + Psest_1219 0.89 -0.8
1,327,516 - Psest_1219 0.89 +0.4

Or see this region's nucleotide sequence