Strain Fitness in Pseudomonas stutzeri RCH2

Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4405

Experiment: RCH2 grown on a colony of 8R2A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	RCH2 grown on a colony of 8R2A
				remove
5,900	+			-1.2
5,900	+			-0.5
5,900	+			+0.1
5,900	+			+1.5
5,900	+			+0.8
5,900	+			-1.7
5,900	+			-3.8
5,900	+			+2.7
5,900	+			-0.8
5,900	+			-1.2
5,900	+			-1.5
5,900	+			-0.8
5,900	+			-0.8
5,998	+			+0.8
5,998	+			-0.0
5,998	+			-2.1
5,998	+			-1.5
5,998	+			-1.7
5,998	+			-1.8
5,998	+			-2.0
5,998	+			+1.2
5,998	+			-3.0
5,998	+			+0.8
5,998	+			-2.6
5,998	+			-3.8
5,998	+			+0.2
5,998	+			-1.9
5,998	+			+2.8
5,999	-			-2.1
5,999	-			-1.4
6,040	+			-0.5
6,040	+			-0.2
6,040	+			-0.8
6,040	+			+0.5
6,040	+			-1.8
6,041	-			-0.2
6,081	+			-0.8
6,081	+			-1.0
6,081	+			+4.2
6,081	+			-0.5
6,108	+			-2.5
6,108	+			-0.3
6,240	+			-0.2
6,240	+			+2.8
6,331	+			-1.7
6,349	+			-0.8
6,349	+			-0.8
6,349	+			+1.8
6,349	+			+0.2
6,350	-			-1.9
6,356	+			-0.8
6,356	+			-2.1
6,356	+			-0.2
6,356	+			+0.2
6,447	+			+0.2
6,447	+			-1.2
6,447	+			-0.8
6,447	+			-1.5
6,447	+			-2.7
6,498	+			-1.7
6,498	+			-0.8
6,498	+			-0.2
6,498	+			-0.8
6,509	+			+1.8
6,509	+			+0.5
6,509	+			-0.5
6,509	+			-0.2
6,509	+			-1.9
6,509	+			-1.2
6,509	+			-1.4
6,509	+			-0.8
6,509	+			+0.2
6,509	+			-0.5
6,509	+			-0.8
6,510	-			+1.8
6,510	-			-1.2
6,522	+			-0.2
6,584	+			-0.5
6,638	+			+0.6
6,638	+			-0.2
6,638	+			-2.4
6,658	+	Psest_4404	0.14	-1.4
6,658	+	Psest_4404	0.14	-0.2
6,658	+	Psest_4404	0.14	-1.9
6,658	+	Psest_4404	0.14	-1.5
6,658	+	Psest_4404	0.14	-1.5
6,658	+	Psest_4404	0.14	+1.8
6,658	+	Psest_4404	0.14	+1.2
6,658	+	Psest_4404	0.14	+0.2
6,658	+	Psest_4404	0.14	-2.4
6,658	+	Psest_4404	0.14	-1.9
6,658	+	Psest_4404	0.14	-1.0
6,658	+	Psest_4404	0.14	-1.2
6,658	+	Psest_4404	0.14	-1.1
6,658	+	Psest_4404	0.14	-2.0
6,658	+	Psest_4404	0.14	+6.0
6,658	+	Psest_4404	0.14	-0.5
6,658	+	Psest_4404	0.14	-2.5
6,658	+	Psest_4404	0.14	-1.4
6,658	+	Psest_4404	0.14	+1.8
6,659	-	Psest_4404	0.14	-0.5
6,659	-	Psest_4404	0.14	-3.3
6,659	-	Psest_4404	0.14	+0.7
6,659	-	Psest_4404	0.14	-1.7
6,659	-	Psest_4404	0.14	-2.0
6,659	-	Psest_4404	0.14	-0.8
6,659	-	Psest_4404	0.14	-2.0
6,659	-	Psest_4404	0.14	-1.0
6,659	-	Psest_4404	0.14	-2.1
6,665	+	Psest_4404	0.16	+0.2
6,665	+	Psest_4404	0.16	+5.7
6,665	+	Psest_4404	0.16	+1.8
6,665	+	Psest_4404	0.16	-0.5
6,665	+	Psest_4404	0.16	-0.1
6,665	+	Psest_4404	0.16	-0.2
6,665	+	Psest_4404	0.16	+1.0
6,665	+	Psest_4404	0.16	+7.4
6,666	-	Psest_4404	0.16	-1.0
6,716	+	Psest_4404	0.35	-1.1
6,716	+	Psest_4404	0.35	-2.1
6,716	+	Psest_4404	0.35	-1.2
6,716	+	Psest_4404	0.35	-0.8
6,716	+	Psest_4404	0.35	-1.7
6,717	-	Psest_4404	0.35	-0.5
6,717	-	Psest_4404	0.35	-1.8
6,717	-	Psest_4404	0.35	+0.2
6,743	+	Psest_4404	0.45	-0.5
6,743	+	Psest_4404	0.45	-3.3
6,743	+	Psest_4404	0.45	+3.0
6,743	+	Psest_4404	0.45	-0.7
6,743	+	Psest_4404	0.45	-1.8
6,743	+	Psest_4404	0.45	+0.2
6,743	+	Psest_4404	0.45	+2.9
6,744	-	Psest_4404	0.45	+4.1
6,744	-	Psest_4404	0.45	+0.8
6,744	-	Psest_4404	0.45	+0.2
6,744	-	Psest_4404	0.45	-2.8
6,744	-	Psest_4404	0.45	+0.8
6,744	-	Psest_4404	0.45	-2.5
6,744	-	Psest_4404	0.45	-1.4
6,744	-	Psest_4404	0.45	+0.8
6,744	-	Psest_4404	0.45	-1.9
6,744	-	Psest_4404	0.45	+1.2
6,858	+	Psest_4404	0.87	-1.5
6,858	+	Psest_4404	0.87	-1.8
6,858	+	Psest_4404	0.87	-0.8
6,858	+	Psest_4404	0.87	-0.0
6,858	+	Psest_4404	0.87	-0.5
6,858	+	Psest_4404	0.87	-1.7
6,858	+	Psest_4404	0.87	-0.8
6,858	+	Psest_4404	0.87	-2.5
6,858	+	Psest_4404	0.87	-1.2
6,858	+	Psest_4404	0.87	-1.8
6,858	+	Psest_4404	0.87	-0.8
6,858	+	Psest_4404	0.87	+1.6
6,858	+	Psest_4404	0.87	+0.2
6,858	+	Psest_4404	0.87	-1.2
6,858	+	Psest_4404	0.87	-0.8
6,858	+	Psest_4404	0.87	-0.8
6,858	+	Psest_4404	0.87	-0.2
6,858	+	Psest_4404	0.87	-0.8
6,859	-	Psest_4404	0.87	-0.2
6,859	-	Psest_4404	0.87	+0.5
6,859	-	Psest_4404	0.87	+0.2
6,859	-	Psest_4404	0.87	-0.0
6,859	-	Psest_4404	0.87	-0.2
6,859	-	Psest_4404	0.87	-1.7
6,859	-	Psest_4404	0.87	-1.5
6,859	-	Psest_4404	0.87	+3.5
6,859	-	Psest_4404	0.87	-0.5
6,859	-	Psest_4404	0.87	-0.8
6,859	-	Psest_4404	0.87	+2.8
6,859	-	Psest_4404	0.87	-0.8
6,859	-	Psest_4404	0.87	+1.8
6,859	-	Psest_4404	0.87	-0.5
6,859	-	Psest_4404	0.87	-0.8
6,859	-	Psest_4404	0.87	+0.8
6,859	-	Psest_4404	0.87	+0.2
6,859	-	Psest_4404	0.87	-2.3
6,859	-	Psest_4404	0.87	-0.7
6,859	-	Psest_4404	0.87	+3.7
6,859	-	Psest_4404	0.87	-0.2
6,861	+	Psest_4404	0.88	+0.6
6,861	+	Psest_4404	0.88	-1.5
6,861	+	Psest_4404	0.88	-1.4
6,861	+	Psest_4404	0.88	+0.2
6,861	+	Psest_4404	0.88	+0.2
6,861	+	Psest_4404	0.88	+2.5
6,861	+	Psest_4404	0.88	-2.3
6,862	-	Psest_4404	0.88	+5.4
6,862	-	Psest_4404	0.88	-2.1
6,862	-	Psest_4404	0.88	-0.5
6,862	-	Psest_4404	0.88	-3.3
7,014	+	Psest_4405	0.69	-1.4
7,014	+	Psest_4405	0.69	-2.5
7,014	+	Psest_4405	0.69	-2.1
7,014	+	Psest_4405	0.69	-0.2
7,014	+	Psest_4405	0.69	-2.5
7,015	-	Psest_4405	0.69	+4.6
7,239	+	Psest_4406	0.82	-2.6
7,239	+	Psest_4406	0.82	+0.2
7,239	+	Psest_4406	0.82	-1.5
7,240	-	Psest_4406	0.83	+5.0
7,240	-	Psest_4406	0.83	+1.7
7,305	-			+3.9
7,445	+			+0.2
7,445	+			-1.0
7,445	+			-2.5
7,445	+			-0.4
7,445	+			-2.3
7,445	+			-0.3
7,445	+			+0.2
7,445	+			-0.2
7,445	+			-1.2
7,445	+			-0.2
7,445	+			+3.7
7,445	+			-0.8
7,445	+			-1.7
7,445	+			-1.0
7,445	+			-1.0
7,445	+			-1.9
7,445	+			-0.4
7,445	+			-0.3
7,445	+			-1.0
7,445	+			-0.2
7,445	+			-2.0
7,446	-			-3.7
7,446	-			-1.0
7,446	-			+1.1
7,446	-			-1.2
7,446	-			+1.8
7,446	-			+0.8
7,446	-			+0.1
7,446	-			-0.5
7,446	-			+2.2
7,446	-			-1.2
7,446	-			-0.5
7,446	-			+5.0
7,446	-			-0.5
7,446	-			-1.4
7,446	-			+1.1
7,446	-			-0.5
7,446	-			+0.2
7,446	-			+1.5
7,446	-			-0.5
7,446	-			-0.8
7,446	-			-1.2
7,446	-			+4.5
7,446	-			-1.0
7,446	-			-1.7
7,446	-			+0.2
7,446	-			-0.8
7,446	-			+5.5
7,446	-			-1.7
7,446	-			-1.0
7,446	-			+3.9
7,446	-			-1.7
7,446	-			+2.7
7,446	-			+0.8
7,446	-			+3.3
7,551	-			+2.3
7,551	-			+2.9
7,631	+			-2.0
7,631	+			-1.9
7,631	+			-1.2
7,632	-			-1.7
7,632	-			+2.2
7,632	-			+3.8
7,632	-			-3.2
7,632	-			-0.0
7,632	-			-2.3
7,632	-			-1.2
7,652	+			-1.7
7,652	+			-0.2
7,652	+			-0.5
7,652	+			-2.0
7,652	+			-1.2
7,653	-			+3.7
7,653	-			+0.7
7,653	-			+1.8
7,653	-			+1.8
7,653	-			+3.4
7,653	-			+5.8
7,653	-			-0.6
7,653	-			+0.6
7,653	-			+0.8
7,653	-			+0.2
7,653	-			-0.7
7,653	-			+0.8
7,664	+			-2.5
7,664	+			+0.8
7,664	+			-1.4
7,664	+			-0.2
7,664	+			+1.8
7,665	-			-1.2
7,665	-			+1.8
7,665	-			-0.7
7,665	-			-1.9
7,665	-			-1.0
7,665	-			+0.8
7,665	-			+0.8
7,665	-			-1.7
7,665	-			-1.0
7,665	-			+1.7
7,699	-			+1.8
7,705	+			-0.2
7,706	-			+0.2
7,825	+			-1.4
7,825	+			-2.2
7,825	+			-0.2
7,825	+			-3.2
7,825	+			+0.2
7,825	+			+4.3
7,825	+			-1.0
7,825	+			-0.9
7,825	+			+4.7
7,825	+			-2.2
7,825	+			+0.2
7,825	+			-2.1
7,825	+			+0.2
7,825	+			+0.2
7,825	+			-1.8
7,825	+			+1.0
7,825	+			-2.1
7,825	+			-3.2
7,825	+			-0.5
7,825	+			-1.0
7,825	+			-2.5
7,825	+			-2.2
7,825	+			-2.3
7,825	+			-2.1
7,825	+			-0.2
7,825	+			-2.8
7,825	+			+0.4
7,825	+			+3.1
7,826	-			-0.8
7,826	-			-1.0
7,826	-			+3.4
7,826	-			+0.2
7,826	-			-2.0
7,826	-			-0.2
7,826	-			-1.4
7,826	-			+1.8
7,826	-			-1.0
7,826	-			+1.3
7,826	-			-2.0
7,826	-			+0.2
7,826	-			-1.2
7,826	-			+4.5
7,826	-			+2.9
7,826	-			+1.8
7,826	-			+0.8
7,826	-			-1.2
7,826	-			-1.2
7,826	-			+3.0
7,826	-			-2.2
7,826	-			-0.2
7,826	-			-1.4
7,826	-			+4.0
7,826	-			-2.0
7,826	-			+1.6
7,846	+			+2.3
7,846	+			+1.2
7,846	+			-1.4
7,846	+			-2.6
7,846	+			+0.8
7,846	+			-2.1
7,846	+			-2.5
7,846	+			-2.7
7,846	+			-2.1
7,846	+			-1.0
7,847	-			+3.1
7,847	-			-1.5
7,847	-			+1.8
7,847	-			-1.0
7,847	-			-2.3
7,847	-			-1.0
7,847	-			+1.8
7,847	-			+3.5

Or see this region's nucleotide sequence