Experiment: RCH2 grown on a colony of 8R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0387 and Psest_0388 are separated by 188 nucleotides Psest_0388 and Psest_0389 overlap by 1 nucleotides Psest_0389 and Psest_0390 are separated by 5 nucleotides
Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464
_0387
Psest_0388: Psest_0388 - hypothetical protein, at 417,653 to 417,778
_0388
Psest_0389: Psest_0389 - hypothetical protein, at 417,778 to 417,975
_0389
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Position (kb) 417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 416.854 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.968 kb on + strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 416.969 kb on - strand, within Psest_0387 at 417.072 kb on - strand, within Psest_0387 at 417.145 kb on + strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.519 kb on - strand at 417.519 kb on - strand at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 418.639 kb on + strand, within Psest_0390 at 418.639 kb on + strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.973 kb on + strand at 418.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of 8R2A remove 416,854 + Psest_0387 0.56 +0.7 416,968 + Psest_0387 0.64 +0.5 416,968 + Psest_0387 0.64 -1.3 416,968 + Psest_0387 0.64 +0.4 416,968 + Psest_0387 0.64 -1.5 416,969 - Psest_0387 0.64 +0.0 416,969 - Psest_0387 0.64 -3.3 416,969 - Psest_0387 0.64 -1.3 417,072 - Psest_0387 0.72 +3.4 417,145 + Psest_0387 0.77 +1.4 417,146 - Psest_0387 0.77 +0.1 417,146 - Psest_0387 0.77 +0.2 417,146 - Psest_0387 0.77 -1.4 417,154 + Psest_0387 0.77 -1.9 417,154 + Psest_0387 0.77 -0.8 417,154 + Psest_0387 0.77 +3.2 417,154 + Psest_0387 0.77 -2.6 417,154 + Psest_0387 0.77 -1.2 417,154 + Psest_0387 0.77 -1.2 417,154 + Psest_0387 0.77 +3.0 417,154 + Psest_0387 0.77 -2.3 417,154 + Psest_0387 0.77 -1.3 417,154 + Psest_0387 0.77 +1.2 417,154 + Psest_0387 0.77 -0.6 417,154 + Psest_0387 0.77 -1.3 417,154 + Psest_0387 0.77 -3.6 417,155 - Psest_0387 0.78 -1.2 417,155 - Psest_0387 0.78 -1.3 417,155 - Psest_0387 0.78 +0.1 417,155 - Psest_0387 0.78 -0.6 417,155 - Psest_0387 0.78 -3.2 417,155 - Psest_0387 0.78 -1.2 417,155 - Psest_0387 0.78 -1.7 417,155 - Psest_0387 0.78 +1.7 417,155 - Psest_0387 0.78 -0.2 417,155 - Psest_0387 0.78 +0.0 417,155 - Psest_0387 0.78 +0.4 417,155 - Psest_0387 0.78 -0.2 417,155 - Psest_0387 0.78 -3.5 417,196 + Psest_0387 0.81 -2.9 417,196 + Psest_0387 0.81 +2.2 417,196 + Psest_0387 0.81 -2.9 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 -1.6 417,196 + Psest_0387 0.81 -1.3 417,196 + Psest_0387 0.81 -2.1 417,196 + Psest_0387 0.81 +1.2 417,196 + Psest_0387 0.81 +0.4 417,196 + Psest_0387 0.81 +2.5 417,196 + Psest_0387 0.81 -1.4 417,196 + Psest_0387 0.81 -2.1 417,196 + Psest_0387 0.81 -2.2 417,196 + Psest_0387 0.81 +1.0 417,196 + Psest_0387 0.81 -3.1 417,196 + Psest_0387 0.81 -0.4 417,196 + Psest_0387 0.81 +0.6 417,196 + Psest_0387 0.81 +0.9 417,196 + Psest_0387 0.81 -1.8 417,196 + Psest_0387 0.81 +2.3 417,196 + Psest_0387 0.81 -1.4 417,197 - Psest_0387 0.81 -1.4 417,197 - Psest_0387 0.81 +0.3 417,197 - Psest_0387 0.81 -0.9 417,197 - Psest_0387 0.81 +0.8 417,197 - Psest_0387 0.81 -1.5 417,197 - Psest_0387 0.81 +1.5 417,197 - Psest_0387 0.81 -1.4 417,197 - Psest_0387 0.81 +1.1 417,197 - Psest_0387 0.81 -1.6 417,197 - Psest_0387 0.81 -1.0 417,197 - Psest_0387 0.81 -3.0 417,197 - Psest_0387 0.81 +1.8 417,197 - Psest_0387 0.81 -1.9 417,197 - Psest_0387 0.81 +2.2 417,197 - Psest_0387 0.81 +1.1 417,333 + +0.8 417,333 + +0.6 417,333 + +1.2 417,333 + +1.7 417,333 + -2.4 417,333 + +2.5 417,333 + +1.1 417,333 + -2.4 417,333 + +1.8 417,334 - +1.6 417,334 - -2.1 417,334 - -1.2 417,334 - -2.7 417,334 - +0.1 417,334 - +1.9 417,334 - +0.5 417,334 - +0.2 417,334 - +0.2 417,334 - -3.0 417,337 + -0.9 417,337 + +2.5 417,337 + -0.8 417,337 + +0.8 417,337 + -0.9 417,338 - +3.3 417,338 - +1.9 417,338 - -1.8 417,338 - -0.3 417,446 + -0.4 417,446 + +3.0 417,446 + +0.0 417,519 - -2.2 417,519 - +2.2 417,886 + Psest_0389 0.55 -0.8 417,886 + Psest_0389 0.55 +2.2 417,886 + Psest_0389 0.55 -2.4 417,886 + Psest_0389 0.55 -0.5 417,886 + Psest_0389 0.55 -2.1 417,886 + Psest_0389 0.55 +0.9 417,887 - Psest_0389 0.55 +1.4 417,887 - Psest_0389 0.55 -1.0 417,887 - Psest_0389 0.55 +2.9 418,639 + Psest_0390 0.66 -2.9 418,639 + Psest_0390 0.66 -0.5 418,640 - Psest_0390 0.66 -0.4 418,640 - Psest_0390 0.66 -0.5 418,973 + -0.3 418,974 - -1.7
Or see this region's nucleotide sequence