Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0362

Experiment: RCH2 grown on a colony of 8R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0361 and Psest_0362 overlap by 1 nucleotidesPsest_0362 and Psest_0363 are separated by 58 nucleotides Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776 _0361 Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303 _0362 Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333 _0363 Position (kb) 388 389 390Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 387.836 kb on + strand, within Psest_0361at 387.905 kb on + strand, within Psest_0361at 387.906 kb on - strand, within Psest_0361at 387.998 kb on + strand, within Psest_0361at 387.998 kb on + strand, within Psest_0361at 387.999 kb on - strand, within Psest_0361at 387.999 kb on - strand, within Psest_0361at 387.999 kb on - strand, within Psest_0361at 387.999 kb on - strand, within Psest_0361at 388.007 kb on + strand, within Psest_0361at 388.007 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.165 kb on + strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.166 kb on - strand, within Psest_0361at 388.181 kb on + strand, within Psest_0361at 388.182 kb on - strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.304 kb on + strand, within Psest_0361at 388.305 kb on - strand, within Psest_0361at 388.305 kb on - strand, within Psest_0361at 388.346 kb on - strand, within Psest_0361at 388.729 kb on + strandat 388.810 kb on + strandat 388.843 kb on + strand, within Psest_0362at 388.843 kb on + strand, within Psest_0362at 388.843 kb on + strand, within Psest_0362at 388.903 kb on + strand, within Psest_0362at 388.903 kb on + strand, within Psest_0362at 388.904 kb on - strand, within Psest_0362at 388.942 kb on + strand, within Psest_0362at 388.943 kb on - strand, within Psest_0362at 388.943 kb on - strand, within Psest_0362at 388.972 kb on + strand, within Psest_0362at 389.266 kb on + strandat 389.267 kb on - strandat 389.286 kb on + strandat 389.287 kb on - strandat 389.411 kb on + strandat 389.412 kb on - strandat 389.412 kb on - strandat 389.412 kb on - strandat 389.441 kb on + strandat 389.657 kb on + strand, within Psest_0363at 389.657 kb on + strand, within Psest_0363at 389.657 kb on + strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.879 kb on + strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of 8R2A
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387,836 + Psest_0361 0.27 -0.5
387,905 + Psest_0361 0.32 -0.6
387,906 - Psest_0361 0.32 -3.6
387,998 + Psest_0361 0.39 -2.1
387,998 + Psest_0361 0.39 -1.5
387,999 - Psest_0361 0.39 -1.9
387,999 - Psest_0361 0.39 +0.5
387,999 - Psest_0361 0.39 -0.7
387,999 - Psest_0361 0.39 +1.0
388,007 + Psest_0361 0.40 +3.4
388,007 + Psest_0361 0.40 +1.2
388,165 + Psest_0361 0.52 +1.2
388,165 + Psest_0361 0.52 +1.2
388,165 + Psest_0361 0.52 +2.6
388,165 + Psest_0361 0.52 -2.6
388,165 + Psest_0361 0.52 -1.2
388,165 + Psest_0361 0.52 +1.7
388,166 - Psest_0361 0.52 -0.2
388,166 - Psest_0361 0.52 +2.7
388,166 - Psest_0361 0.52 +1.9
388,166 - Psest_0361 0.52 +0.9
388,166 - Psest_0361 0.52 +0.8
388,166 - Psest_0361 0.52 -2.5
388,166 - Psest_0361 0.52 +0.4
388,181 + Psest_0361 0.53 -3.5
388,182 - Psest_0361 0.54 +1.2
388,304 + Psest_0361 0.63 -1.7
388,304 + Psest_0361 0.63 +1.1
388,304 + Psest_0361 0.63 +0.5
388,304 + Psest_0361 0.63 +1.2
388,304 + Psest_0361 0.63 +2.1
388,304 + Psest_0361 0.63 -0.3
388,304 + Psest_0361 0.63 -1.4
388,304 + Psest_0361 0.63 +0.3
388,305 - Psest_0361 0.63 -1.0
388,305 - Psest_0361 0.63 +0.0
388,346 - Psest_0361 0.66 +0.3
388,729 + -3.3
388,810 + +3.5
388,843 + Psest_0362 0.13 -0.9
388,843 + Psest_0362 0.13 +0.0
388,843 + Psest_0362 0.13 -3.0
388,903 + Psest_0362 0.24 +0.0
388,903 + Psest_0362 0.24 -1.6
388,904 - Psest_0362 0.24 +1.4
388,942 + Psest_0362 0.31 +0.1
388,943 - Psest_0362 0.32 +1.0
388,943 - Psest_0362 0.32 -1.8
388,972 + Psest_0362 0.37 -0.7
389,266 + -2.3
389,267 - +3.5
389,286 + -1.5
389,287 - +0.2
389,411 + -1.9
389,412 - +3.1
389,412 - -0.5
389,412 - +2.0
389,441 + +3.0
389,657 + Psest_0363 0.30 -0.6
389,657 + Psest_0363 0.30 -1.7
389,657 + Psest_0363 0.30 +0.0
389,658 - Psest_0363 0.30 +0.3
389,658 - Psest_0363 0.30 +1.7
389,658 - Psest_0363 0.30 +1.0
389,658 - Psest_0363 0.30 +0.3
389,879 + Psest_0363 0.53 -0.6
389,880 - Psest_0363 0.53 +0.1
389,880 - Psest_0363 0.53 +0.4
389,880 - Psest_0363 0.53 +2.4
389,880 - Psest_0363 0.53 +4.0
389,880 - Psest_0363 0.53 +3.3
389,880 - Psest_0363 0.53 -0.6

Or see this region's nucleotide sequence