Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0267

Experiment: RCH2 grown on a colony of 8R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0264 and Psest_0265 are separated by 68 nucleotidesPsest_0265 and Psest_0266 are separated by 88 nucleotidesPsest_0266 and Psest_0267 are separated by 74 nucleotidesPsest_0267 and Psest_0268 are separated by 65 nucleotides Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127 _0264 Psest_0265: Psest_0265 - Uncharacterized small membrane protein, at 282,196 to 282,570 _0265 Psest_0266: Psest_0266 - thiamine biosynthesis protein ThiS, at 282,659 to 282,859 _0266 Psest_0267: Psest_0267 - Uncharacterized enzyme of thiazole biosynthesis, at 282,934 to 283,728 _0267 Psest_0268: Psest_0268 - tRNA (guanine-N(7)-)-methyltransferase, at 283,794 to 284,510 _0268 Position (kb) 282 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 281.974 kb on + strand, within Psest_0264at 282.056 kb on + strandat 282.056 kb on + strandat 282.057 kb on - strandat 282.057 kb on - strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.162 kb on + strandat 282.163 kb on - strandat 282.208 kb on + strandat 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.329 kb on - strand, within Psest_0265at 282.454 kb on + strand, within Psest_0265at 282.454 kb on + strand, within Psest_0265at 282.455 kb on - strand, within Psest_0265at 282.622 kb on - strandat 282.686 kb on + strand, within Psest_0266at 282.686 kb on + strand, within Psest_0266at 282.687 kb on - strand, within Psest_0266at 282.726 kb on + strand, within Psest_0266at 282.727 kb on - strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.889 kb on + strandat 282.890 kb on - strandat 282.892 kb on - strandat 282.909 kb on + strandat 282.909 kb on + strandat 282.910 kb on - strandat 282.982 kb on + strandat 282.982 kb on + strandat 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.150 kb on + strand, within Psest_0267at 283.151 kb on - strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.658 kb on - strandat 283.687 kb on + strandat 283.788 kb on + strandat 283.788 kb on + strandat 283.789 kb on - strandat 283.789 kb on - strandat 284.079 kb on - strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.142 kb on + strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.143 kb on - strand, within Psest_0268at 284.319 kb on - strand, within Psest_0268at 284.349 kb on + strand, within Psest_0268at 284.349 kb on + strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.350 kb on - strand, within Psest_0268at 284.479 kb on + strandat 284.537 kb on - strandat 284.537 kb on - strandat 284.537 kb on - strandat 284.538 kb on + strandat 284.608 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.668 kb on + strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.669 kb on - strandat 284.670 kb on + strandat 284.670 kb on + strandat 284.670 kb on + strandat 284.671 kb on - strandat 284.671 kb on - strandat 284.671 kb on - strandat 284.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of 8R2A
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281,974 + Psest_0264 0.79 -0.9
282,056 + +0.3
282,056 + -1.4
282,057 - +0.7
282,057 - -3.6
282,160 + +4.0
282,160 + -2.4
282,160 + +0.9
282,161 - +1.1
282,161 - +1.1
282,161 - -0.8
282,161 - -0.8
282,161 - +0.9
282,162 + -0.5
282,163 - +2.0
282,208 + +0.2
282,299 - Psest_0265 0.27 -1.2
282,299 - Psest_0265 0.27 -2.0
282,299 - Psest_0265 0.27 -0.5
282,299 - Psest_0265 0.27 +1.0
282,299 - Psest_0265 0.27 -1.5
282,299 - Psest_0265 0.27 +1.8
282,329 - Psest_0265 0.35 +1.0
282,454 + Psest_0265 0.69 -2.0
282,454 + Psest_0265 0.69 -1.5
282,455 - Psest_0265 0.69 -2.3
282,622 - -2.2
282,686 + Psest_0266 0.13 -1.9
282,686 + Psest_0266 0.13 -1.5
282,687 - Psest_0266 0.14 -1.0
282,726 + Psest_0266 0.33 -3.4
282,727 - Psest_0266 0.34 -1.2
282,837 + Psest_0266 0.89 -3.5
282,837 + Psest_0266 0.89 -0.5
282,837 + Psest_0266 0.89 -0.5
282,837 + Psest_0266 0.89 -2.6
282,838 - Psest_0266 0.89 -2.5
282,838 - Psest_0266 0.89 -0.2
282,838 - Psest_0266 0.89 -1.9
282,838 - Psest_0266 0.89 -0.3
282,838 - Psest_0266 0.89 +0.6
282,838 - Psest_0266 0.89 -0.9
282,838 - Psest_0266 0.89 -1.3
282,889 + +0.8
282,890 - -0.2
282,892 - +2.2
282,909 + +0.7
282,909 + -2.2
282,910 - +0.6
282,982 + -1.9
282,982 + -2.3
283,015 + Psest_0267 0.10 -2.1
283,015 + Psest_0267 0.10 -2.6
283,015 + Psest_0267 0.10 -3.0
283,015 + Psest_0267 0.10 -0.8
283,150 + Psest_0267 0.27 -1.1
283,151 - Psest_0267 0.27 -2.3
283,280 + Psest_0267 0.44 -2.7
283,280 + Psest_0267 0.44 -3.3
283,351 + Psest_0267 0.52 +0.3
283,351 + Psest_0267 0.52 -2.0
283,351 + Psest_0267 0.52 -1.1
283,352 - Psest_0267 0.53 -4.4
283,352 - Psest_0267 0.53 -3.1
283,352 - Psest_0267 0.53 -1.9
283,352 - Psest_0267 0.53 -1.9
283,352 - Psest_0267 0.53 -2.0
283,352 - Psest_0267 0.53 -0.3
283,352 - Psest_0267 0.53 -1.7
283,352 - Psest_0267 0.53 +0.3
283,352 - Psest_0267 0.53 -2.8
283,352 - Psest_0267 0.53 -0.3
283,459 + Psest_0267 0.66 -4.2
283,459 + Psest_0267 0.66 -2.4
283,460 - Psest_0267 0.66 +0.0
283,460 - Psest_0267 0.66 -2.5
283,630 + Psest_0267 0.88 -2.4
283,630 + Psest_0267 0.88 -1.0
283,630 + Psest_0267 0.88 -2.3
283,630 + Psest_0267 0.88 -2.2
283,630 + Psest_0267 0.88 -2.5
283,630 + Psest_0267 0.88 -0.0
283,631 - Psest_0267 0.88 -2.9
283,631 - Psest_0267 0.88 -1.8
283,631 - Psest_0267 0.88 -1.0
283,658 - -2.9
283,687 + -3.1
283,788 + +1.0
283,788 + +1.3
283,789 - +2.8
283,789 - +0.9
284,079 - Psest_0268 0.40 +0.1
284,142 + Psest_0268 0.49 +3.4
284,142 + Psest_0268 0.49 -4.1
284,142 + Psest_0268 0.49 -2.2
284,142 + Psest_0268 0.49 +0.6
284,142 + Psest_0268 0.49 +1.3
284,142 + Psest_0268 0.49 +1.0
284,143 - Psest_0268 0.49 -4.4
284,143 - Psest_0268 0.49 +1.3
284,143 - Psest_0268 0.49 +1.3
284,143 - Psest_0268 0.49 +0.3
284,319 - Psest_0268 0.73 +0.4
284,349 + Psest_0268 0.77 +4.0
284,349 + Psest_0268 0.77 -2.2
284,350 - Psest_0268 0.78 +3.9
284,350 - Psest_0268 0.78 -2.8
284,350 - Psest_0268 0.78 +2.7
284,350 - Psest_0268 0.78 +1.4
284,479 + -2.6
284,537 - +0.7
284,537 - +2.8
284,537 - +0.8
284,538 + -2.0
284,608 + +1.3
284,668 + +1.4
284,668 + +3.8
284,668 + -0.0
284,668 + +2.6
284,669 - -2.2
284,669 - +2.4
284,669 - +4.2
284,669 - -1.1
284,669 - +2.0
284,669 - -1.3
284,670 + +1.2
284,670 + -1.7
284,670 + +1.3
284,671 - -3.5
284,671 - +1.9
284,671 - +0.4
284,671 - -0.4

Or see this region's nucleotide sequence