Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0210

Experiment: RCH2 grown on a colony of 8R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0209 and Psest_0210 overlap by 4 nucleotidesPsest_0210 and Psest_0211 are separated by 140 nucleotides Psest_0209: Psest_0209 - membrane protein AbrB duplication, at 209,355 to 210,383 _0209 Psest_0210: Psest_0210 - Na/Pi-cotransporter, at 210,380 to 212,065 _0210 Psest_0211: Psest_0211 - hypothetical protein, at 212,206 to 213,102 _0211 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 209.509 kb on + strand, within Psest_0209at 209.899 kb on + strand, within Psest_0209at 210.569 kb on + strand, within Psest_0210at 210.569 kb on + strand, within Psest_0210at 210.695 kb on + strand, within Psest_0210at 210.695 kb on + strand, within Psest_0210at 210.696 kb on - strand, within Psest_0210at 210.696 kb on - strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.915 kb on + strand, within Psest_0210at 210.915 kb on + strand, within Psest_0210at 210.933 kb on + strand, within Psest_0210at 210.933 kb on + strand, within Psest_0210at 210.934 kb on - strand, within Psest_0210at 210.934 kb on - strand, within Psest_0210at 211.010 kb on + strand, within Psest_0210at 211.036 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.162 kb on - strand, within Psest_0210at 211.162 kb on - strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.225 kb on - strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.490 kb on + strand, within Psest_0210at 211.491 kb on - strand, within Psest_0210at 211.509 kb on + strand, within Psest_0210at 211.510 kb on - strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.699 kb on + strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.700 kb on - strand, within Psest_0210at 211.718 kb on + strand, within Psest_0210at 211.719 kb on - strand, within Psest_0210at 211.980 kb on + strandat 212.008 kb on + strandat 212.008 kb on + strandat 212.184 kb on + strandat 212.185 kb on - strandat 212.185 kb on - strandat 212.185 kb on - strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.219 kb on + strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.239 kb on + strandat 212.239 kb on + strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.240 kb on - strandat 212.309 kb on + strand, within Psest_0211at 212.310 kb on - strand, within Psest_0211at 212.310 kb on - strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.395 kb on + strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.396 kb on - strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.407 kb on + strand, within Psest_0211at 212.408 kb on - strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.471 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.606 kb on + strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.607 kb on - strand, within Psest_0211at 212.609 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.696 kb on + strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.697 kb on - strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.858 kb on + strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.859 kb on - strand, within Psest_0211at 212.861 kb on + strand, within Psest_0211at 213.064 kb on + strandat 213.064 kb on + strandat 213.064 kb on + strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strandat 213.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of 8R2A
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209,509 + Psest_0209 0.15 +1.0
209,899 + Psest_0209 0.53 -1.8
210,569 + Psest_0210 0.11 -0.9
210,569 + Psest_0210 0.11 -0.6
210,695 + Psest_0210 0.19 -2.9
210,695 + Psest_0210 0.19 +2.0
210,696 - Psest_0210 0.19 +0.0
210,696 - Psest_0210 0.19 -0.6
210,833 + Psest_0210 0.27 +0.7
210,833 + Psest_0210 0.27 -2.0
210,833 + Psest_0210 0.27 -1.2
210,833 + Psest_0210 0.27 -0.8
210,833 + Psest_0210 0.27 +1.2
210,833 + Psest_0210 0.27 -0.1
210,834 - Psest_0210 0.27 -1.2
210,834 - Psest_0210 0.27 -1.9
210,834 - Psest_0210 0.27 +0.8
210,834 - Psest_0210 0.27 -3.4
210,915 + Psest_0210 0.32 -1.7
210,915 + Psest_0210 0.32 -0.5
210,933 + Psest_0210 0.33 +0.4
210,933 + Psest_0210 0.33 -0.8
210,934 - Psest_0210 0.33 +0.7
210,934 - Psest_0210 0.33 -0.6
211,010 + Psest_0210 0.37 +0.4
211,036 + Psest_0210 0.39 -1.2
211,161 + Psest_0210 0.46 +1.1
211,161 + Psest_0210 0.46 +2.7
211,161 + Psest_0210 0.46 -0.9
211,161 + Psest_0210 0.46 +1.8
211,162 - Psest_0210 0.46 -0.6
211,162 - Psest_0210 0.46 -1.3
211,224 + Psest_0210 0.50 -2.8
211,224 + Psest_0210 0.50 -1.8
211,224 + Psest_0210 0.50 +3.3
211,225 - Psest_0210 0.50 -0.1
211,332 + Psest_0210 0.56 -2.0
211,332 + Psest_0210 0.56 -0.3
211,333 - Psest_0210 0.57 -0.9
211,333 - Psest_0210 0.57 -1.6
211,333 - Psest_0210 0.57 -0.7
211,333 - Psest_0210 0.57 -0.3
211,333 - Psest_0210 0.57 -1.0
211,333 - Psest_0210 0.57 +0.2
211,333 - Psest_0210 0.57 +0.8
211,490 + Psest_0210 0.66 -1.2
211,491 - Psest_0210 0.66 +2.3
211,509 + Psest_0210 0.67 -1.5
211,510 - Psest_0210 0.67 -0.4
211,699 + Psest_0210 0.78 +1.3
211,699 + Psest_0210 0.78 -1.6
211,699 + Psest_0210 0.78 +0.7
211,699 + Psest_0210 0.78 -3.3
211,699 + Psest_0210 0.78 +1.8
211,699 + Psest_0210 0.78 -0.8
211,700 - Psest_0210 0.78 -1.9
211,700 - Psest_0210 0.78 -0.0
211,700 - Psest_0210 0.78 -0.5
211,700 - Psest_0210 0.78 +1.3
211,718 + Psest_0210 0.79 +2.6
211,719 - Psest_0210 0.79 -2.1
211,980 + -1.0
212,008 + -0.1
212,008 + +0.8
212,184 + -0.2
212,185 - -1.7
212,185 - -1.2
212,185 - +1.6
212,219 + -3.4
212,219 + +0.5
212,219 + -0.3
212,219 + +2.6
212,219 + -0.6
212,220 - -0.0
212,220 - -1.5
212,220 - +0.0
212,220 - -1.7
212,220 - -1.6
212,220 - +0.2
212,220 - -0.3
212,220 - -0.2
212,220 - -1.7
212,239 + -2.6
212,239 + +0.4
212,240 - +0.0
212,240 - +3.2
212,240 - +1.4
212,240 - -0.5
212,309 + Psest_0211 0.11 +1.9
212,310 - Psest_0211 0.12 -0.8
212,310 - Psest_0211 0.12 -3.5
212,395 + Psest_0211 0.21 -2.4
212,395 + Psest_0211 0.21 +1.7
212,395 + Psest_0211 0.21 +2.4
212,395 + Psest_0211 0.21 -1.3
212,395 + Psest_0211 0.21 -0.2
212,395 + Psest_0211 0.21 -2.6
212,395 + Psest_0211 0.21 +1.8
212,395 + Psest_0211 0.21 +0.2
212,395 + Psest_0211 0.21 +2.6
212,395 + Psest_0211 0.21 +1.7
212,396 - Psest_0211 0.21 -2.0
212,396 - Psest_0211 0.21 -1.1
212,396 - Psest_0211 0.21 -2.0
212,396 - Psest_0211 0.21 +0.8
212,407 + Psest_0211 0.22 -1.6
212,407 + Psest_0211 0.22 -1.9
212,407 + Psest_0211 0.22 -0.5
212,407 + Psest_0211 0.22 -1.0
212,407 + Psest_0211 0.22 +1.5
212,408 - Psest_0211 0.23 +2.3
212,471 + Psest_0211 0.30 +2.3
212,471 + Psest_0211 0.30 +1.9
212,471 + Psest_0211 0.30 +2.3
212,471 + Psest_0211 0.30 +1.9
212,471 + Psest_0211 0.30 -1.5
212,606 + Psest_0211 0.45 +0.1
212,606 + Psest_0211 0.45 +0.7
212,606 + Psest_0211 0.45 -2.2
212,606 + Psest_0211 0.45 -1.7
212,606 + Psest_0211 0.45 +1.2
212,606 + Psest_0211 0.45 +2.1
212,606 + Psest_0211 0.45 +0.2
212,606 + Psest_0211 0.45 +0.4
212,606 + Psest_0211 0.45 +1.2
212,606 + Psest_0211 0.45 +1.3
212,606 + Psest_0211 0.45 -1.4
212,606 + Psest_0211 0.45 -1.0
212,606 + Psest_0211 0.45 +0.4
212,606 + Psest_0211 0.45 -1.0
212,606 + Psest_0211 0.45 -1.6
212,607 - Psest_0211 0.45 -0.2
212,607 - Psest_0211 0.45 -1.7
212,607 - Psest_0211 0.45 -0.4
212,607 - Psest_0211 0.45 -2.6
212,607 - Psest_0211 0.45 +1.4
212,607 - Psest_0211 0.45 -0.2
212,607 - Psest_0211 0.45 +1.4
212,607 - Psest_0211 0.45 +0.1
212,607 - Psest_0211 0.45 +1.0
212,607 - Psest_0211 0.45 -1.9
212,607 - Psest_0211 0.45 +0.2
212,607 - Psest_0211 0.45 -0.2
212,607 - Psest_0211 0.45 +1.0
212,607 - Psest_0211 0.45 +1.8
212,609 + Psest_0211 0.45 +2.6
212,696 + Psest_0211 0.55 -0.8
212,696 + Psest_0211 0.55 +1.8
212,696 + Psest_0211 0.55 +0.9
212,696 + Psest_0211 0.55 +1.5
212,696 + Psest_0211 0.55 +1.3
212,697 - Psest_0211 0.55 -2.2
212,697 - Psest_0211 0.55 -0.5
212,697 - Psest_0211 0.55 -1.5
212,858 + Psest_0211 0.73 -1.3
212,858 + Psest_0211 0.73 +2.1
212,858 + Psest_0211 0.73 -2.5
212,858 + Psest_0211 0.73 +0.5
212,858 + Psest_0211 0.73 -2.1
212,858 + Psest_0211 0.73 -0.2
212,858 + Psest_0211 0.73 -1.2
212,858 + Psest_0211 0.73 -0.1
212,858 + Psest_0211 0.73 +2.8
212,858 + Psest_0211 0.73 -2.6
212,858 + Psest_0211 0.73 -1.6
212,858 + Psest_0211 0.73 +0.3
212,859 - Psest_0211 0.73 -2.3
212,859 - Psest_0211 0.73 -1.2
212,859 - Psest_0211 0.73 +3.0
212,859 - Psest_0211 0.73 -0.2
212,859 - Psest_0211 0.73 -1.4
212,859 - Psest_0211 0.73 +2.3
212,859 - Psest_0211 0.73 +0.8
212,859 - Psest_0211 0.73 -2.3
212,859 - Psest_0211 0.73 +1.3
212,859 - Psest_0211 0.73 -1.8
212,861 + Psest_0211 0.73 -0.8
213,064 + -3.3
213,064 + -0.3
213,064 + -0.3
213,065 - -1.4
213,065 - -2.4
213,065 - -0.6
213,065 - -1.0

Or see this region's nucleotide sequence