Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0858

Experiment: RCH2 grown on a colony of N2C3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0856 and Psest_0857 are separated by 275 nucleotidesPsest_0857 and Psest_0858 are separated by 251 nucleotidesPsest_0858 and Psest_0859 are separated by 122 nucleotides Psest_0856: Psest_0856 - Predicted oxidoreductase, at 927,168 to 928,031 _0856 Psest_0857: Psest_0857 - Membrane transporters of cations and cationic drugs, at 928,307 to 928,627 _0857 Psest_0858: Psest_0858 - Maltose operon periplasmic protein precursor (MalM)., at 928,879 to 929,802 _0858 Psest_0859: Psest_0859 - Maltoporin (phage lambda and maltose receptor), at 929,925 to 931,217 _0859 Position (kb) 928 929 930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 927.993 kb on + strandat 927.993 kb on + strandat 927.993 kb on + strandat 927.993 kb on + strandat 928.101 kb on + strandat 928.102 kb on - strandat 928.102 kb on - strandat 928.102 kb on - strandat 928.104 kb on + strandat 928.105 kb on - strandat 928.105 kb on - strandat 928.105 kb on - strandat 928.168 kb on + strandat 928.227 kb on - strandat 928.488 kb on - strand, within Psest_0857at 928.488 kb on - strand, within Psest_0857at 928.668 kb on + strandat 928.668 kb on + strandat 928.669 kb on - strandat 928.669 kb on - strandat 928.718 kb on + strandat 928.747 kb on + strandat 928.747 kb on + strandat 928.747 kb on + strandat 928.747 kb on + strandat 928.747 kb on + strandat 928.747 kb on + strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.748 kb on - strandat 928.750 kb on - strandat 928.750 kb on - strandat 928.804 kb on + strandat 928.826 kb on + strandat 929.012 kb on + strand, within Psest_0858at 929.012 kb on + strand, within Psest_0858at 929.012 kb on + strand, within Psest_0858at 929.013 kb on - strand, within Psest_0858at 929.096 kb on - strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.100 kb on - strand, within Psest_0858at 929.158 kb on + strand, within Psest_0858at 929.222 kb on + strand, within Psest_0858at 929.279 kb on + strand, within Psest_0858at 929.280 kb on - strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strandat 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.477 kb on + strand, within Psest_0858at 929.478 kb on - strand, within Psest_0858at 929.478 kb on - strand, within Psest_0858at 929.556 kb on - strand, within Psest_0858at 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.913 kb on - strandat 929.913 kb on - strandat 929.927 kb on - strandat 930.004 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.197 kb on - strand, within Psest_0859at 930.262 kb on + strand, within Psest_0859at 930.262 kb on + strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.415 kb on + strand, within Psest_0859at 930.416 kb on - strand, within Psest_0859at 930.478 kb on + strand, within Psest_0859at 930.524 kb on - strand, within Psest_0859at 930.730 kb on + strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2C3
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927,993 + +3.0
927,993 + +1.2
927,993 + +1.2
927,993 + -2.4
928,101 + +2.4
928,102 - -0.3
928,102 - -2.6
928,102 - -1.9
928,104 + +0.5
928,105 - -2.3
928,105 - -0.8
928,105 - -1.0
928,168 + -0.7
928,227 - -0.8
928,488 - Psest_0857 0.56 -1.5
928,488 - Psest_0857 0.56 -1.7
928,668 + -1.5
928,668 + +2.0
928,669 - +1.4
928,669 - +0.9
928,718 + -0.3
928,747 + -0.5
928,747 + -0.8
928,747 + -2.7
928,747 + -1.4
928,747 + +2.0
928,747 + +1.3
928,748 - -2.8
928,748 - +0.4
928,748 - -1.4
928,748 - +0.8
928,748 - -0.6
928,748 - -0.6
928,748 - -2.4
928,748 - -1.0
928,748 - -1.5
928,748 - -0.3
928,748 - -0.0
928,748 - +0.5
928,750 - -0.3
928,750 - -0.6
928,804 + -1.5
928,826 + +0.5
929,012 + Psest_0858 0.14 +1.3
929,012 + Psest_0858 0.14 +0.1
929,012 + Psest_0858 0.14 -1.1
929,013 - Psest_0858 0.15 +1.1
929,096 - Psest_0858 0.23 +1.3
929,099 + Psest_0858 0.24 -0.9
929,099 + Psest_0858 0.24 -1.1
929,099 + Psest_0858 0.24 -2.1
929,100 - Psest_0858 0.24 -2.0
929,158 + Psest_0858 0.30 -1.6
929,222 + Psest_0858 0.37 -1.8
929,279 + Psest_0858 0.43 -1.1
929,280 - Psest_0858 0.43 -1.7
929,381 + Psest_0858 0.54 -1.4
929,381 + Psest_0858 0.54 -1.3
929,381 + Psest_0858 0.54 -0.3
929,382 - Psest_0858 0.54 -0.3
929,382 - Psest_0858 0.54 -1.6
929,382 - Psest_0858 0.54 +0.7
929,382 - +1.6
929,382 - Psest_0858 0.54 -1.7
929,382 - Psest_0858 0.54 -1.9
929,382 - Psest_0858 0.54 +0.9
929,382 - Psest_0858 0.54 -0.1
929,382 - Psest_0858 0.54 -0.6
929,382 - Psest_0858 0.54 -2.1
929,477 + Psest_0858 0.65 -1.0
929,478 - Psest_0858 0.65 +0.7
929,478 - Psest_0858 0.65 -1.1
929,556 - Psest_0858 0.73 -0.4
929,912 + -0.0
929,912 + -1.8
929,912 + +3.5
929,912 + +4.4
929,912 + +0.9
929,912 + -0.0
929,913 - -1.0
929,913 - +2.7
929,927 - -0.4
930,004 + +0.3
930,028 + -1.1
930,028 + -2.8
930,028 + +1.7
930,028 + +1.6
930,028 + -0.4
930,028 + +1.4
930,028 + -1.5
930,029 - -1.1
930,029 - -2.2
930,029 - -0.4
930,029 - +0.0
930,196 + Psest_0859 0.21 -1.4
930,196 + Psest_0859 0.21 +0.5
930,196 + Psest_0859 0.21 +1.0
930,196 + Psest_0859 0.21 -1.0
930,197 - Psest_0859 0.21 -0.0
930,262 + Psest_0859 0.26 -1.1
930,262 + Psest_0859 0.26 +0.5
930,263 - Psest_0859 0.26 +0.7
930,263 - Psest_0859 0.26 +1.6
930,263 - Psest_0859 0.26 -0.8
930,274 + Psest_0859 0.27 -0.9
930,274 + Psest_0859 0.27 -1.5
930,274 + Psest_0859 0.27 -0.9
930,274 + Psest_0859 0.27 -2.9
930,274 + Psest_0859 0.27 -0.8
930,274 + Psest_0859 0.27 -0.4
930,274 + Psest_0859 0.27 -1.4
930,274 + Psest_0859 0.27 -0.1
930,274 + Psest_0859 0.27 -1.8
930,274 + Psest_0859 0.27 +0.6
930,274 + Psest_0859 0.27 -2.4
930,274 + Psest_0859 0.27 +3.0
930,274 + Psest_0859 0.27 -1.0
930,275 - Psest_0859 0.27 -0.4
930,275 - Psest_0859 0.27 -0.9
930,275 - Psest_0859 0.27 -1.0
930,275 - Psest_0859 0.27 -1.8
930,275 - Psest_0859 0.27 -0.7
930,275 - Psest_0859 0.27 -0.6
930,275 - Psest_0859 0.27 +0.4
930,275 - Psest_0859 0.27 -0.0
930,275 - Psest_0859 0.27 -2.4
930,275 - Psest_0859 0.27 -1.4
930,275 - Psest_0859 0.27 -1.4
930,415 + Psest_0859 0.38 -2.7
930,416 - Psest_0859 0.38 -2.0
930,478 + Psest_0859 0.43 +1.8
930,524 - Psest_0859 0.46 -0.5
930,730 + Psest_0859 0.62 -0.3
930,731 - Psest_0859 0.62 -0.9
930,731 - Psest_0859 0.62 +0.6
930,733 + Psest_0859 0.62 -4.0
930,733 + Psest_0859 0.62 -1.0
930,733 + Psest_0859 0.62 -1.4
930,733 + Psest_0859 0.62 -0.6
930,733 + Psest_0859 0.62 -0.0
930,733 + Psest_0859 0.62 -1.1
930,733 + Psest_0859 0.62 -2.2
930,733 + Psest_0859 0.62 -0.2
930,733 + Psest_0859 0.62 -0.3
930,733 + Psest_0859 0.62 -0.0
930,733 + Psest_0859 0.62 -0.9
930,734 - Psest_0859 0.63 -0.3
930,734 - Psest_0859 0.63 -1.4
930,734 - Psest_0859 0.63 -3.0
930,766 + Psest_0859 0.65 -3.4
930,766 + Psest_0859 0.65 -1.4
930,766 + Psest_0859 0.65 +0.4
930,766 + Psest_0859 0.65 -3.7
930,766 + Psest_0859 0.65 +2.3
930,766 + Psest_0859 0.65 -1.3
930,766 + Psest_0859 0.65 -3.0
930,767 - Psest_0859 0.65 -1.0
930,767 - Psest_0859 0.65 +1.0
930,767 - Psest_0859 0.65 +0.2
930,767 - Psest_0859 0.65 +1.5
930,767 - Psest_0859 0.65 +1.0
930,767 - Psest_0859 0.65 +1.1
930,767 - Psest_0859 0.65 +1.0
930,767 - Psest_0859 0.65 +1.2

Or see this region's nucleotide sequence