Experiment: RCH2 grown on a colony of N2C3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4099 and Psest_4100 are separated by 181 nucleotides Psest_4100 and Psest_4101 are separated by 113 nucleotides
Psest_4099: Psest_4099 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 4,278,977 to 4,280,080
_4099
Psest_4100: Psest_4100 - Uncharacterized protein conserved in bacteria, at 4,280,262 to 4,281,104
_4100
Psest_4101: Psest_4101 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,281,218 to 4,282,168
_4101
Position (kb) 4280
4281
4282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4279.304 kb on + strand, within Psest_4099 at 4279.305 kb on - strand, within Psest_4099 at 4279.307 kb on + strand, within Psest_4099 at 4279.308 kb on - strand, within Psest_4099 at 4279.427 kb on + strand, within Psest_4099 at 4279.427 kb on + strand, within Psest_4099 at 4279.428 kb on - strand, within Psest_4099 at 4279.491 kb on - strand, within Psest_4099 at 4279.540 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.703 kb on + strand, within Psest_4099 at 4279.704 kb on - strand, within Psest_4099 at 4279.704 kb on - strand, within Psest_4099 at 4279.704 kb on - strand, within Psest_4099 at 4279.704 kb on - strand, within Psest_4099 at 4279.704 kb on - strand, within Psest_4099 at 4279.706 kb on + strand, within Psest_4099 at 4279.706 kb on + strand, within Psest_4099 at 4279.706 kb on + strand, within Psest_4099 at 4279.706 kb on + strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.707 kb on - strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.709 kb on + strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.710 kb on - strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.847 kb on + strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.848 kb on - strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.853 kb on + strand, within Psest_4099 at 4279.854 kb on - strand, within Psest_4099 at 4279.854 kb on - strand, within Psest_4099 at 4279.854 kb on - strand, within Psest_4099 at 4279.854 kb on - strand, within Psest_4099 at 4280.066 kb on + strand at 4280.066 kb on + strand at 4280.066 kb on + strand at 4280.066 kb on + strand at 4280.066 kb on + strand at 4280.067 kb on - strand at 4280.067 kb on - strand at 4280.067 kb on - strand at 4280.067 kb on - strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.187 kb on + strand at 4280.188 kb on - strand at 4280.188 kb on - strand at 4280.188 kb on - strand at 4280.188 kb on - strand at 4280.188 kb on - strand at 4280.233 kb on + strand at 4280.297 kb on + strand at 4280.907 kb on + strand, within Psest_4100 at 4280.907 kb on + strand, within Psest_4100 at 4280.907 kb on + strand, within Psest_4100 at 4280.907 kb on + strand, within Psest_4100 at 4280.907 kb on + strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4280.908 kb on - strand, within Psest_4100 at 4281.111 kb on + strand at 4281.112 kb on - strand at 4281.298 kb on - strand at 4281.319 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.576 kb on + strand, within Psest_4101 at 4281.576 kb on + strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.732 kb on + strand, within Psest_4101 at 4281.732 kb on + strand, within Psest_4101 at 4281.812 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.011 kb on + strand, within Psest_4101 at 4282.012 kb on - strand, within Psest_4101 at 4282.012 kb on - strand, within Psest_4101
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2C3 remove 4,279,304 + Psest_4099 0.30 -0.6 4,279,305 - Psest_4099 0.30 -1.4 4,279,307 + Psest_4099 0.30 +1.0 4,279,308 - Psest_4099 0.30 +2.0 4,279,427 + Psest_4099 0.41 +0.2 4,279,427 + Psest_4099 0.41 +0.6 4,279,428 - Psest_4099 0.41 -1.0 4,279,491 - Psest_4099 0.47 -0.2 4,279,540 + Psest_4099 0.51 -1.0 4,279,703 + Psest_4099 0.66 -0.5 4,279,703 + Psest_4099 0.66 -0.9 4,279,703 + Psest_4099 0.66 +5.6 4,279,703 + Psest_4099 0.66 +0.3 4,279,703 + Psest_4099 0.66 -1.9 4,279,703 + Psest_4099 0.66 -1.4 4,279,703 + Psest_4099 0.66 +0.5 4,279,703 + Psest_4099 0.66 -0.7 4,279,703 + Psest_4099 0.66 -0.4 4,279,703 + Psest_4099 0.66 +0.3 4,279,703 + Psest_4099 0.66 -1.9 4,279,703 + Psest_4099 0.66 -2.0 4,279,703 + Psest_4099 0.66 -1.6 4,279,703 + Psest_4099 0.66 -0.3 4,279,704 - Psest_4099 0.66 -0.9 4,279,704 - Psest_4099 0.66 +1.8 4,279,704 - Psest_4099 0.66 -1.9 4,279,704 - Psest_4099 0.66 +1.9 4,279,704 - Psest_4099 0.66 +0.3 4,279,706 + Psest_4099 0.66 +0.2 4,279,706 + Psest_4099 0.66 -0.6 4,279,706 + Psest_4099 0.66 -2.4 4,279,706 + Psest_4099 0.66 -0.9 4,279,707 - Psest_4099 0.66 -1.1 4,279,707 - Psest_4099 0.66 +1.4 4,279,707 - Psest_4099 0.66 -0.7 4,279,707 - Psest_4099 0.66 +1.3 4,279,707 - Psest_4099 0.66 +0.0 4,279,707 - Psest_4099 0.66 -1.0 4,279,707 - Psest_4099 0.66 -1.9 4,279,707 - Psest_4099 0.66 -1.5 4,279,707 - Psest_4099 0.66 -0.7 4,279,707 - Psest_4099 0.66 -0.6 4,279,709 + Psest_4099 0.66 -0.2 4,279,709 + Psest_4099 0.66 -0.6 4,279,709 + Psest_4099 0.66 +1.0 4,279,709 + Psest_4099 0.66 +2.0 4,279,709 + Psest_4099 0.66 +0.5 4,279,709 + Psest_4099 0.66 +2.4 4,279,709 + Psest_4099 0.66 -0.7 4,279,709 + Psest_4099 0.66 -1.0 4,279,710 - Psest_4099 0.66 -0.6 4,279,710 - Psest_4099 0.66 -2.2 4,279,710 - Psest_4099 0.66 +1.0 4,279,710 - Psest_4099 0.66 -1.0 4,279,710 - Psest_4099 0.66 -1.6 4,279,710 - Psest_4099 0.66 +0.5 4,279,710 - Psest_4099 0.66 -0.2 4,279,710 - Psest_4099 0.66 +0.1 4,279,710 - Psest_4099 0.66 -1.0 4,279,710 - Psest_4099 0.66 +0.1 4,279,847 + Psest_4099 0.79 -1.1 4,279,847 + Psest_4099 0.79 +0.3 4,279,847 + Psest_4099 0.79 +1.9 4,279,847 + Psest_4099 0.79 -1.5 4,279,847 + Psest_4099 0.79 -0.7 4,279,847 + Psest_4099 0.79 -0.3 4,279,847 + Psest_4099 0.79 -2.0 4,279,847 + Psest_4099 0.79 -0.4 4,279,847 + Psest_4099 0.79 -1.4 4,279,847 + Psest_4099 0.79 +1.4 4,279,847 + Psest_4099 0.79 -1.6 4,279,847 + Psest_4099 0.79 -2.3 4,279,847 + Psest_4099 0.79 +1.3 4,279,847 + Psest_4099 0.79 +3.4 4,279,847 + Psest_4099 0.79 +2.0 4,279,847 + Psest_4099 0.79 +0.0 4,279,847 + Psest_4099 0.79 -1.2 4,279,847 + Psest_4099 0.79 -1.8 4,279,848 - Psest_4099 0.79 -1.0 4,279,848 - Psest_4099 0.79 -2.5 4,279,848 - Psest_4099 0.79 -0.7 4,279,848 - Psest_4099 0.79 -0.9 4,279,848 - Psest_4099 0.79 -0.5 4,279,848 - Psest_4099 0.79 +0.3 4,279,848 - Psest_4099 0.79 +1.1 4,279,848 - Psest_4099 0.79 +1.3 4,279,848 - Psest_4099 0.79 -0.4 4,279,848 - Psest_4099 0.79 -0.9 4,279,848 - Psest_4099 0.79 -0.6 4,279,848 - Psest_4099 0.79 -0.9 4,279,853 + Psest_4099 0.79 +0.2 4,279,853 + Psest_4099 0.79 -2.6 4,279,853 + Psest_4099 0.79 +0.3 4,279,853 + Psest_4099 0.79 +1.7 4,279,853 + Psest_4099 0.79 +2.2 4,279,853 + Psest_4099 0.79 -1.3 4,279,853 + Psest_4099 0.79 -1.7 4,279,854 - Psest_4099 0.79 +0.5 4,279,854 - Psest_4099 0.79 -2.0 4,279,854 - Psest_4099 0.79 -2.8 4,279,854 - Psest_4099 0.79 +0.4 4,280,066 + -1.6 4,280,066 + +2.0 4,280,066 + -1.9 4,280,066 + -0.2 4,280,066 + +2.0 4,280,067 - -0.9 4,280,067 - +0.3 4,280,067 - +4.6 4,280,067 - +0.0 4,280,187 + +1.5 4,280,187 + +0.1 4,280,187 + -0.9 4,280,187 + -1.5 4,280,187 + -0.4 4,280,187 + -1.3 4,280,187 + +1.4 4,280,187 + +1.6 4,280,187 + +3.0 4,280,188 - -0.2 4,280,188 - +2.4 4,280,188 - -0.0 4,280,188 - -3.6 4,280,188 - +2.3 4,280,233 + +1.0 4,280,297 + +1.2 4,280,907 + Psest_4100 0.77 -1.7 4,280,907 + Psest_4100 0.77 -2.0 4,280,907 + Psest_4100 0.77 -1.5 4,280,907 + Psest_4100 0.77 -2.0 4,280,907 + Psest_4100 0.77 +0.1 4,280,908 - Psest_4100 0.77 +2.6 4,280,908 - Psest_4100 0.77 -1.0 4,280,908 - Psest_4100 0.77 -1.9 4,280,908 - Psest_4100 0.77 -1.1 4,280,908 - Psest_4100 0.77 -0.9 4,280,908 - Psest_4100 0.77 +1.3 4,280,908 - Psest_4100 0.77 -1.1 4,281,111 + +3.7 4,281,112 - -0.4 4,281,298 - -0.5 4,281,319 + Psest_4101 0.11 +1.2 4,281,459 + Psest_4101 0.25 +0.9 4,281,459 + Psest_4101 0.25 +0.5 4,281,459 + Psest_4101 0.25 -0.4 4,281,459 + Psest_4101 0.25 -0.1 4,281,459 + Psest_4101 0.25 +0.0 4,281,459 + Psest_4101 0.25 -2.1 4,281,459 + Psest_4101 0.25 +1.4 4,281,460 - Psest_4101 0.25 -0.1 4,281,460 - Psest_4101 0.25 -1.9 4,281,460 - Psest_4101 0.25 -2.2 4,281,460 - Psest_4101 0.25 +0.3 4,281,460 - Psest_4101 0.25 -0.7 4,281,460 - Psest_4101 0.25 -1.3 4,281,460 - Psest_4101 0.25 +1.5 4,281,460 - Psest_4101 0.25 -0.6 4,281,460 - Psest_4101 0.25 -2.5 4,281,576 + Psest_4101 0.38 -1.3 4,281,576 + Psest_4101 0.38 +0.1 4,281,577 - Psest_4101 0.38 -1.2 4,281,577 - Psest_4101 0.38 +0.9 4,281,577 - Psest_4101 0.38 +0.3 4,281,577 - Psest_4101 0.38 +4.2 4,281,732 + Psest_4101 0.54 -1.0 4,281,732 + Psest_4101 0.54 +0.1 4,281,812 + Psest_4101 0.62 -1.5 4,282,008 + Psest_4101 0.83 -1.4 4,282,008 + Psest_4101 0.83 -2.0 4,282,008 + Psest_4101 0.83 -0.1 4,282,008 + Psest_4101 0.83 +2.2 4,282,008 + Psest_4101 0.83 -0.7 4,282,008 + Psest_4101 0.83 +1.8 4,282,008 + Psest_4101 0.83 -0.2 4,282,009 - Psest_4101 0.83 -0.5 4,282,009 - Psest_4101 0.83 -0.1 4,282,009 - Psest_4101 0.83 +1.8 4,282,009 - Psest_4101 0.83 +0.9 4,282,009 - Psest_4101 0.83 -0.6 4,282,009 - Psest_4101 0.83 -1.7 4,282,009 - Psest_4101 0.83 +1.6 4,282,009 - Psest_4101 0.83 +1.1 4,282,009 - Psest_4101 0.83 -0.8 4,282,011 + Psest_4101 0.83 -0.9 4,282,012 - Psest_4101 0.83 -3.2 4,282,012 - Psest_4101 0.83 +1.5
Or see this region's nucleotide sequence