Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0284

Experiment: RCH2 grown on a colony of N2C3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0282 and Psest_0283 are separated by 9 nucleotidesPsest_0283 and Psest_0284 are separated by 10 nucleotidesPsest_0284 and Psest_0285 are separated by 66 nucleotides Psest_0282: Psest_0282 - Predicted integral membrane protein, at 298,149 to 298,739 _0282 Psest_0283: Psest_0283 - pyrroline-5-carboxylate reductase, at 298,749 to 299,573 _0283 Psest_0284: Psest_0284 - pyridoxal phosphate enzyme, YggS family, at 299,584 to 300,273 _0284 Psest_0285: Psest_0285 - pilus retraction protein PilT, at 300,340 to 301,374 _0285 Position (kb) 299 300 301Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 298.630 kb on + strand, within Psest_0282at 299.036 kb on - strand, within Psest_0283at 299.573 kb on + strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.698 kb on - strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.846 kb on - strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.924 kb on - strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.252 kb on + strandat 300.252 kb on + strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.326 kb on - strandat 300.326 kb on - strandat 300.346 kb on - strandat 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.776 kb on - strand, within Psest_0285at 300.793 kb on + strand, within Psest_0285at 300.793 kb on + strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2C3
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298,630 + Psest_0282 0.81 -0.0
299,036 - Psest_0283 0.35 -1.0
299,573 + -1.0
299,574 - -0.2
299,574 - -0.5
299,574 - -0.0
299,574 - +0.7
299,574 - +1.0
299,698 - Psest_0284 0.17 -2.6
299,845 + Psest_0284 0.38 -2.1
299,845 + Psest_0284 0.38 -1.6
299,846 - Psest_0284 0.38 -2.8
299,908 + Psest_0284 0.47 -1.5
299,908 + Psest_0284 0.47 -1.4
299,908 + Psest_0284 0.47 -2.8
299,908 + Psest_0284 0.47 -2.5
299,908 + Psest_0284 0.47 -0.9
299,908 + Psest_0284 0.47 -0.2
299,908 + Psest_0284 0.47 -2.7
299,909 - Psest_0284 0.47 -3.0
299,909 - Psest_0284 0.47 -0.7
299,909 - Psest_0284 0.47 -3.9
299,909 - Psest_0284 0.47 -2.6
299,909 - Psest_0284 0.47 -1.6
299,909 - Psest_0284 0.47 -0.5
299,909 - Psest_0284 0.47 -1.5
299,909 - Psest_0284 0.47 +0.0
299,909 - Psest_0284 0.47 -1.5
299,909 - Psest_0284 0.47 -1.7
299,909 - Psest_0284 0.47 +0.3
299,909 - Psest_0284 0.47 +0.1
299,909 - Psest_0284 0.47 -2.6
299,909 - Psest_0284 0.47 -0.5
299,909 - Psest_0284 0.47 -2.8
299,909 - Psest_0284 0.47 -3.5
299,909 - Psest_0284 0.47 +0.3
299,909 - Psest_0284 0.47 -1.9
299,909 - Psest_0284 0.47 -0.4
299,909 - Psest_0284 0.47 -2.6
299,909 - Psest_0284 0.47 -2.0
299,910 + Psest_0284 0.47 -2.2
299,910 + Psest_0284 0.47 -1.6
299,910 + Psest_0284 0.47 -0.0
299,910 + Psest_0284 0.47 -0.9
299,910 + Psest_0284 0.47 -3.5
299,910 + Psest_0284 0.47 -0.2
299,910 + Psest_0284 0.47 -1.3
299,910 + Psest_0284 0.47 -0.7
299,911 - Psest_0284 0.47 -0.0
299,911 - Psest_0284 0.47 -1.1
299,911 - Psest_0284 0.47 +1.6
299,911 - Psest_0284 0.47 -2.1
299,911 - Psest_0284 0.47 -1.0
299,911 - Psest_0284 0.47 -1.9
299,911 - Psest_0284 0.47 -2.3
299,911 - Psest_0284 0.47 -2.1
299,911 - Psest_0284 0.47 -2.1
299,911 - Psest_0284 0.47 -0.2
299,911 - Psest_0284 0.47 -0.7
299,911 - Psest_0284 0.47 -1.5
299,911 - Psest_0284 0.47 -2.7
299,911 - Psest_0284 0.47 +0.6
299,911 - Psest_0284 0.47 -2.5
299,911 - Psest_0284 0.47 -0.8
299,911 - Psest_0284 0.47 -0.9
299,911 - Psest_0284 0.47 -0.6
299,911 - Psest_0284 0.47 -3.0
299,911 - Psest_0284 0.47 -0.3
299,923 + Psest_0284 0.49 -1.2
299,923 + Psest_0284 0.49 -0.0
299,924 - Psest_0284 0.49 -0.0
300,101 + Psest_0284 0.75 +1.4
300,101 + Psest_0284 0.75 -3.0
300,101 + Psest_0284 0.75 -1.7
300,101 + Psest_0284 0.75 -1.7
300,101 + Psest_0284 0.75 -0.6
300,101 + Psest_0284 0.75 -0.4
300,102 - Psest_0284 0.75 -1.4
300,102 - Psest_0284 0.75 -0.6
300,102 - Psest_0284 0.75 -3.7
300,102 - Psest_0284 0.75 -1.7
300,102 - Psest_0284 0.75 -1.7
300,102 - Psest_0284 0.75 -3.3
300,252 + -0.0
300,252 + -1.9
300,253 - -3.0
300,253 - +1.5
300,253 - -2.3
300,253 - -0.6
300,274 + -1.6
300,274 + -1.9
300,274 + -1.7
300,274 + +0.6
300,275 - +0.0
300,275 - -0.5
300,275 - -2.1
300,275 - -1.3
300,275 - +1.2
300,275 - -1.4
300,275 - +2.5
300,275 - +1.1
300,275 - +1.6
300,275 - -1.3
300,275 - -1.8
300,275 - -0.5
300,275 - -0.0
300,311 + +2.1
300,311 + -2.0
300,311 + -0.6
300,312 - -0.7
300,312 - -0.9
300,312 - +0.5
300,312 - -2.2
300,312 - -2.0
300,312 - +0.9
300,312 - -3.4
300,312 - +3.6
300,312 - +2.9
300,312 - +1.6
300,312 - -2.3
300,312 - +1.3
300,326 - -0.0
300,326 - -1.7
300,346 - -0.0
300,493 + Psest_0285 0.15 -0.6
300,493 + Psest_0285 0.15 +0.6
300,493 + Psest_0285 0.15 -1.3
300,494 - Psest_0285 0.15 -1.0
300,494 - Psest_0285 0.15 +0.7
300,494 - Psest_0285 0.15 -1.9
300,494 - Psest_0285 0.15 +1.4
300,494 - Psest_0285 0.15 -2.1
300,494 - Psest_0285 0.15 +0.3
300,776 - Psest_0285 0.42 -1.2
300,793 + Psest_0285 0.44 +1.1
300,793 + Psest_0285 0.44 +1.4
300,794 - Psest_0285 0.44 +1.4
300,794 - Psest_0285 0.44 +3.0
300,794 - Psest_0285 0.44 -2.2
301,243 + Psest_0285 0.87 +1.3
301,243 + Psest_0285 0.87 -0.3
301,243 + Psest_0285 0.87 +2.0
301,243 + Psest_0285 0.87 +0.4
301,243 + Psest_0285 0.87 -2.3
301,243 + Psest_0285 0.87 +0.9
301,243 + Psest_0285 0.87 -0.6
301,243 + Psest_0285 0.87 -0.0
301,243 + Psest_0285 0.87 +3.2
301,243 + Psest_0285 0.87 +2.8
301,244 - Psest_0285 0.87 -0.9
301,244 - Psest_0285 0.87 +3.3
301,244 - Psest_0285 0.87 +1.8
301,244 - Psest_0285 0.87 +0.6
301,244 - Psest_0285 0.87 -0.9
301,244 - Psest_0285 0.87 -2.7
301,244 - Psest_0285 0.87 -0.4
301,244 - Psest_0285 0.87 +0.4
301,244 - Psest_0285 0.87 +0.6
301,244 - Psest_0285 0.87 +0.6
301,244 - Psest_0285 0.87 +0.6

Or see this region's nucleotide sequence