Experiment: RCH2 grown on a colony of N2F3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0915 and Psest_0916 are separated by 566 nucleotides Psest_0916 and Psest_0917 are separated by 448 nucleotides
Psest_0915: Psest_0915 - hypothetical protein, at 994,595 to 995,029
_0915
Psest_0916: Psest_0916 - Phage integrase family., at 995,596 to 996,489
_0916
Psest_0917: Psest_0917 - SEC-C motif., at 996,938 to 998,293
_0917
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 994.657 kb on - strand, within Psest_0915 at 994.701 kb on - strand, within Psest_0915 at 994.839 kb on + strand, within Psest_0915 at 994.840 kb on - strand, within Psest_0915 at 994.840 kb on - strand, within Psest_0915 at 994.895 kb on + strand, within Psest_0915 at 994.895 kb on + strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.898 kb on - strand, within Psest_0915 at 994.976 kb on + strand, within Psest_0915 at 994.976 kb on + strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 995.019 kb on - strand at 995.065 kb on + strand at 995.151 kb on + strand at 995.155 kb on + strand at 995.156 kb on - strand at 995.180 kb on + strand at 995.185 kb on + strand at 995.186 kb on - strand at 995.186 kb on - strand at 995.203 kb on + strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.276 kb on - strand at 995.282 kb on - strand at 995.367 kb on + strand at 995.367 kb on + strand at 995.368 kb on - strand at 995.368 kb on - strand at 995.688 kb on + strand, within Psest_0916 at 995.881 kb on - strand, within Psest_0916 at 995.912 kb on + strand, within Psest_0916 at 995.912 kb on + strand, within Psest_0916 at 995.958 kb on - strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.126 kb on + strand, within Psest_0916 at 996.126 kb on + strand, within Psest_0916 at 996.146 kb on + strand, within Psest_0916 at 996.147 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.214 kb on - strand, within Psest_0916 at 996.217 kb on + strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.218 kb on - strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.283 kb on + strand, within Psest_0916 at 996.284 kb on - strand, within Psest_0916 at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.402 kb on + strand at 996.403 kb on - strand at 996.403 kb on - strand at 996.403 kb on - strand at 996.442 kb on - strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.465 kb on + strand at 996.544 kb on + strand at 996.544 kb on + strand at 996.545 kb on - strand at 996.549 kb on - strand at 996.579 kb on + strand at 996.579 kb on + strand at 996.580 kb on - strand at 996.605 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.609 kb on + strand at 996.610 kb on - strand at 996.610 kb on - strand at 996.612 kb on + strand at 996.613 kb on - strand at 996.751 kb on + strand at 996.788 kb on + strand at 996.789 kb on - strand at 996.789 kb on - strand at 996.789 kb on - strand at 996.851 kb on + strand at 996.851 kb on + strand at 996.854 kb on + strand at 996.860 kb on + strand at 996.861 kb on - strand at 996.885 kb on + strand at 996.885 kb on + strand at 996.885 kb on + strand at 996.886 kb on - strand at 996.966 kb on + strand at 996.966 kb on + strand at 996.967 kb on - strand at 996.967 kb on - strand at 997.084 kb on - strand, within Psest_0917 at 997.302 kb on + strand, within Psest_0917 at 997.302 kb on + strand, within Psest_0917 at 997.303 kb on - strand, within Psest_0917 at 997.314 kb on + strand, within Psest_0917 at 997.314 kb on + strand, within Psest_0917 at 997.315 kb on - strand, within Psest_0917 at 997.486 kb on - strand, within Psest_0917
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2F3 remove 994,657 - Psest_0915 0.14 -0.5 994,701 - Psest_0915 0.24 -0.6 994,839 + Psest_0915 0.56 +1.5 994,840 - Psest_0915 0.56 +1.2 994,840 - Psest_0915 0.56 -0.0 994,895 + Psest_0915 0.69 +0.3 994,895 + Psest_0915 0.69 -1.0 994,896 - Psest_0915 0.69 +2.8 994,896 - Psest_0915 0.69 -2.3 994,896 - Psest_0915 0.69 -2.5 994,898 - Psest_0915 0.70 -2.2 994,976 + Psest_0915 0.88 -0.3 994,976 + Psest_0915 0.88 -0.0 994,977 - Psest_0915 0.88 +1.1 994,977 - Psest_0915 0.88 +0.2 994,977 - Psest_0915 0.88 +1.3 995,019 - -1.0 995,065 + -0.6 995,151 + +1.3 995,155 + +0.4 995,156 - -0.7 995,180 + -1.0 995,185 + -2.7 995,186 - -1.9 995,186 - -3.5 995,203 + +1.1 995,204 - -2.6 995,204 - +1.7 995,204 - -2.8 995,204 - +0.8 995,204 - -1.3 995,276 - -2.3 995,282 - +2.9 995,367 + +0.8 995,367 + +1.3 995,368 - +1.2 995,368 - +1.0 995,688 + Psest_0916 0.10 +0.7 995,881 - Psest_0916 0.32 +0.8 995,912 + Psest_0916 0.35 -0.7 995,912 + Psest_0916 0.35 +0.4 995,958 - Psest_0916 0.40 +0.9 996,021 + Psest_0916 0.48 -2.5 996,021 + Psest_0916 0.48 +1.4 996,021 + Psest_0916 0.48 +1.1 996,021 + Psest_0916 0.48 +1.3 996,022 - Psest_0916 0.48 +0.6 996,022 - Psest_0916 0.48 -0.2 996,022 - Psest_0916 0.48 +0.2 996,022 - Psest_0916 0.48 -1.2 996,022 - Psest_0916 0.48 +1.5 996,022 - Psest_0916 0.48 +0.5 996,022 - Psest_0916 0.48 -0.4 996,023 + Psest_0916 0.48 -0.3 996,023 + Psest_0916 0.48 +2.5 996,023 + Psest_0916 0.48 -2.3 996,024 - Psest_0916 0.48 -2.3 996,024 - Psest_0916 0.48 +1.7 996,024 - Psest_0916 0.48 +2.2 996,126 + Psest_0916 0.59 +2.3 996,126 + Psest_0916 0.59 -0.0 996,146 + Psest_0916 0.62 -3.0 996,147 - Psest_0916 0.62 -0.4 996,214 - Psest_0916 0.69 +4.8 996,214 - Psest_0916 0.69 +0.4 996,214 - Psest_0916 0.69 +4.8 996,214 - Psest_0916 0.69 +1.2 996,217 + Psest_0916 0.69 +3.5 996,218 - Psest_0916 0.70 -0.3 996,218 - Psest_0916 0.70 +4.7 996,218 - Psest_0916 0.70 -0.7 996,283 + Psest_0916 0.77 -1.8 996,283 + Psest_0916 0.77 +1.9 996,283 + Psest_0916 0.77 -2.4 996,283 + Psest_0916 0.77 -0.1 996,283 + Psest_0916 0.77 -1.9 996,283 + Psest_0916 0.77 -2.2 996,284 - Psest_0916 0.77 +1.6 996,402 + +0.5 996,402 + -1.9 996,402 + +0.0 996,402 + +0.4 996,402 + +2.5 996,402 + +2.1 996,402 + +1.2 996,402 + +0.5 996,403 - +2.0 996,403 - +0.0 996,403 - -0.6 996,442 - -1.3 996,465 + -0.3 996,465 + -1.5 996,465 + -1.9 996,465 + +2.4 996,465 + -1.6 996,544 + -0.6 996,544 + -0.1 996,545 - +2.3 996,549 - -2.4 996,579 + -2.3 996,579 + +1.7 996,580 - +0.5 996,605 + -1.0 996,609 + -1.8 996,609 + +0.7 996,609 + +0.0 996,609 + -0.0 996,609 + -1.6 996,610 - +1.3 996,610 - -0.3 996,612 + +1.5 996,613 - -1.3 996,751 + +0.5 996,788 + -2.3 996,789 - +1.4 996,789 - +0.7 996,789 - +0.3 996,851 + +1.3 996,851 + +0.1 996,854 + -3.6 996,860 + +2.2 996,861 - -2.3 996,885 + +0.3 996,885 + -0.1 996,885 + -3.1 996,886 - -1.0 996,966 + -1.3 996,966 + +0.7 996,967 - -1.6 996,967 - +1.5 997,084 - Psest_0917 0.11 -0.3 997,302 + Psest_0917 0.27 -2.5 997,302 + Psest_0917 0.27 -0.2 997,303 - Psest_0917 0.27 +0.3 997,314 + Psest_0917 0.28 +1.6 997,314 + Psest_0917 0.28 -0.7 997,315 - Psest_0917 0.28 +1.3 997,486 - Psest_0917 0.40 -0.5
Or see this region's nucleotide sequence