Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0015

Experiment: RCH2 grown on a colony of N2F3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0013 and Psest_0014 are separated by 26 nucleotidesPsest_0014 and Psest_0015 are separated by 25 nucleotidesPsest_0015 and Psest_0016 are separated by 146 nucleotidesPsest_0016 and Psest_0017 overlap by 4 nucleotides Psest_0013: Psest_0013 - Lauroyl/myristoyl acyltransferase, at 15,128 to 16,015 _0013 Psest_0014: Psest_0014 - PilZ domain., at 16,042 to 16,308 _0014 Psest_0015: Psest_0015 - Tetratricopeptide repeat., at 16,334 to 16,651 _0015 Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634 _0016 Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290 _0017 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 15.518 kb on + strand, within Psest_0013at 15.518 kb on + strand, within Psest_0013at 15.519 kb on - strand, within Psest_0013at 15.548 kb on + strand, within Psest_0013at 15.548 kb on + strand, within Psest_0013at 15.549 kb on - strand, within Psest_0013at 15.549 kb on - strand, within Psest_0013at 15.723 kb on + strand, within Psest_0013at 15.724 kb on - strand, within Psest_0013at 15.724 kb on - strand, within Psest_0013at 15.724 kb on - strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.878 kb on + strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.879 kb on - strand, within Psest_0013at 15.932 kb on + strandat 15.932 kb on + strandat 15.932 kb on + strandat 15.933 kb on - strandat 15.933 kb on - strandat 15.933 kb on - strandat 15.933 kb on - strandat 15.944 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.956 kb on + strandat 15.957 kb on - strandat 15.957 kb on - strandat 15.957 kb on - strandat 15.957 kb on - strandat 15.957 kb on - strandat 15.957 kb on - strandat 15.957 kb on - strandat 16.041 kb on + strandat 16.042 kb on - strandat 16.042 kb on - strandat 16.156 kb on + strand, within Psest_0014at 16.156 kb on + strand, within Psest_0014at 16.156 kb on + strand, within Psest_0014at 16.156 kb on + strand, within Psest_0014at 16.157 kb on - strand, within Psest_0014at 16.181 kb on + strand, within Psest_0014at 16.181 kb on + strand, within Psest_0014at 16.182 kb on - strand, within Psest_0014at 16.506 kb on + strand, within Psest_0015at 16.575 kb on + strand, within Psest_0015at 16.575 kb on + strand, within Psest_0015at 16.575 kb on + strand, within Psest_0015at 16.576 kb on - strand, within Psest_0015at 16.698 kb on + strandat 16.699 kb on - strandat 16.733 kb on + strandat 16.734 kb on - strandat 16.734 kb on - strandat 16.734 kb on - strandat 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.287 kb on + strand, within Psest_0016at 17.288 kb on - strand, within Psest_0016at 17.288 kb on - strand, within Psest_0016at 17.288 kb on - strand, within Psest_0016at 17.416 kb on + strand, within Psest_0016at 17.417 kb on - strand, within Psest_0016at 17.628 kb on + strandat 17.629 kb on - strandat 17.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2F3
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15,518 + Psest_0013 0.44 -0.9
15,518 + Psest_0013 0.44 +3.1
15,519 - Psest_0013 0.44 +1.9
15,548 + Psest_0013 0.47 -2.1
15,548 + Psest_0013 0.47 +1.1
15,549 - Psest_0013 0.47 -2.4
15,549 - Psest_0013 0.47 -0.9
15,723 + Psest_0013 0.67 -2.9
15,724 - Psest_0013 0.67 -1.2
15,724 - Psest_0013 0.67 -2.0
15,724 - Psest_0013 0.67 -0.2
15,878 + Psest_0013 0.84 +0.2
15,878 + Psest_0013 0.84 +0.1
15,878 + Psest_0013 0.84 +0.1
15,878 + Psest_0013 0.84 -1.2
15,878 + Psest_0013 0.84 -1.1
15,878 + Psest_0013 0.84 -2.7
15,878 + Psest_0013 0.84 -2.3
15,878 + Psest_0013 0.84 -1.4
15,878 + Psest_0013 0.84 -0.2
15,878 + Psest_0013 0.84 -1.2
15,878 + Psest_0013 0.84 -0.5
15,879 - Psest_0013 0.85 -2.4
15,879 - Psest_0013 0.85 +1.1
15,879 - Psest_0013 0.85 -1.2
15,879 - Psest_0013 0.85 -1.1
15,879 - Psest_0013 0.85 -0.5
15,879 - Psest_0013 0.85 -0.4
15,879 - Psest_0013 0.85 +1.1
15,879 - Psest_0013 0.85 -1.1
15,932 + -2.8
15,932 + -0.5
15,932 + -0.6
15,933 - +1.1
15,933 - -1.7
15,933 - -0.1
15,933 - -0.7
15,944 + +2.1
15,956 + -1.4
15,956 + -1.2
15,956 + -1.5
15,956 + -1.7
15,956 + +0.1
15,956 + +2.1
15,956 + +2.4
15,956 + -0.4
15,956 + -2.5
15,956 + -1.1
15,956 + +1.2
15,956 + +5.1
15,956 + -2.0
15,956 + +0.3
15,956 + -0.2
15,956 + +0.5
15,956 + +0.1
15,957 - -0.5
15,957 - +3.6
15,957 - +1.1
15,957 - +2.1
15,957 - -1.9
15,957 - +1.1
15,957 - +2.1
16,041 + -2.1
16,042 - +2.1
16,042 - +0.7
16,156 + Psest_0014 0.43 +0.5
16,156 + Psest_0014 0.43 -3.0
16,156 + Psest_0014 0.43 +1.4
16,156 + Psest_0014 0.43 +0.2
16,157 - Psest_0014 0.43 -0.1
16,181 + Psest_0014 0.52 -1.6
16,181 + Psest_0014 0.52 -1.4
16,182 - Psest_0014 0.52 +2.5
16,506 + Psest_0015 0.54 -0.2
16,575 + Psest_0015 0.76 -0.5
16,575 + Psest_0015 0.76 +0.6
16,575 + Psest_0015 0.76 -2.6
16,576 - Psest_0015 0.76 -3.1
16,698 + +0.6
16,699 - +1.7
16,733 + -1.1
16,734 - +0.7
16,734 - +1.4
16,734 - +0.1
17,287 + Psest_0016 0.58 -0.6
17,287 + Psest_0016 0.58 +1.9
17,287 + Psest_0016 0.58 +2.0
17,287 + Psest_0016 0.58 -3.2
17,287 + Psest_0016 0.58 -1.2
17,287 + Psest_0016 0.58 -1.5
17,287 + Psest_0016 0.58 -0.1
17,288 - Psest_0016 0.59 -3.2
17,288 - Psest_0016 0.59 -0.2
17,288 - Psest_0016 0.59 +0.3
17,416 + Psest_0016 0.74 -2.1
17,417 - Psest_0016 0.74 -0.5
17,628 + +0.9
17,629 - -3.7
17,629 - -1.2

Or see this region's nucleotide sequence