Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1159

Experiment: RCH2 grown on a colony of N2F3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1158 and Psest_1159 are separated by 166 nucleotidesPsest_1159 and Psest_1160 are separated by 169 nucleotidesPsest_1160 and Psest_1161 are separated by 1 nucleotides Psest_1158: Psest_1158 - Predicted thiol oxidoreductase, at 1,258,095 to 1,259,513 _1158 Psest_1159: Psest_1159 - Uncharacterized iron-regulated protein, at 1,259,680 to 1,261,014 _1159 Psest_1160: Psest_1160 - Uncharacterized conserved protein, at 1,261,184 to 1,261,756 _1160 Psest_1161: Psest_1161 - E3 Ubiquitin ligase., at 1,261,758 to 1,262,651 _1161 Position (kb) 1259 1260 1261 1262Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1258.956 kb on + strand, within Psest_1158at 1258.957 kb on - strand, within Psest_1158at 1259.013 kb on + strand, within Psest_1158at 1259.013 kb on + strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.202 kb on + strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.203 kb on - strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.204 kb on + strand, within Psest_1158at 1259.205 kb on - strand, within Psest_1158at 1259.205 kb on - strand, within Psest_1158at 1259.538 kb on + strandat 1259.538 kb on + strandat 1259.553 kb on + strandat 1259.575 kb on + strandat 1259.866 kb on + strand, within Psest_1159at 1259.990 kb on + strand, within Psest_1159at 1259.991 kb on - strand, within Psest_1159at 1259.991 kb on - strand, within Psest_1159at 1260.002 kb on + strand, within Psest_1159at 1260.002 kb on + strand, within Psest_1159at 1260.003 kb on - strand, within Psest_1159at 1260.136 kb on + strand, within Psest_1159at 1260.137 kb on - strand, within Psest_1159at 1260.206 kb on + strand, within Psest_1159at 1260.207 kb on - strand, within Psest_1159at 1260.284 kb on + strand, within Psest_1159at 1260.285 kb on - strand, within Psest_1159at 1260.335 kb on + strand, within Psest_1159at 1260.335 kb on + strand, within Psest_1159at 1260.335 kb on + strand, within Psest_1159at 1260.336 kb on - strand, within Psest_1159at 1260.511 kb on + strand, within Psest_1159at 1260.686 kb on + strand, within Psest_1159at 1260.686 kb on + strand, within Psest_1159at 1260.686 kb on + strand, within Psest_1159at 1260.686 kb on + strand, within Psest_1159at 1260.687 kb on - strand, within Psest_1159at 1260.687 kb on - strand, within Psest_1159at 1261.010 kb on - strandat 1261.010 kb on - strandat 1261.010 kb on - strandat 1261.235 kb on + strandat 1261.235 kb on + strandat 1261.236 kb on - strandat 1261.250 kb on + strand, within Psest_1160at 1261.251 kb on - strand, within Psest_1160at 1261.251 kb on - strand, within Psest_1160at 1261.364 kb on + strand, within Psest_1160at 1261.607 kb on + strand, within Psest_1160at 1261.607 kb on + strand, within Psest_1160at 1261.608 kb on - strand, within Psest_1160at 1261.899 kb on + strand, within Psest_1161at 1261.900 kb on - strand, within Psest_1161at 1261.900 kb on - strand, within Psest_1161

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2F3
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1,258,956 + Psest_1158 0.61 -0.6
1,258,957 - Psest_1158 0.61 -3.3
1,259,013 + Psest_1158 0.65 -1.2
1,259,013 + Psest_1158 0.65 +1.0
1,259,014 - Psest_1158 0.65 -0.1
1,259,014 - Psest_1158 0.65 +0.4
1,259,014 - Psest_1158 0.65 -0.1
1,259,014 - Psest_1158 0.65 -0.9
1,259,014 - Psest_1158 0.65 -0.6
1,259,014 - Psest_1158 0.65 -0.6
1,259,014 - Psest_1158 0.65 -2.6
1,259,014 - Psest_1158 0.65 -0.1
1,259,014 - Psest_1158 0.65 -0.9
1,259,202 + Psest_1158 0.78 -1.4
1,259,202 + Psest_1158 0.78 -0.1
1,259,202 + Psest_1158 0.78 +3.6
1,259,202 + Psest_1158 0.78 +1.9
1,259,202 + Psest_1158 0.78 +2.6
1,259,202 + Psest_1158 0.78 +1.9
1,259,202 + Psest_1158 0.78 -0.6
1,259,202 + Psest_1158 0.78 -2.1
1,259,202 + Psest_1158 0.78 +1.7
1,259,202 + Psest_1158 0.78 +0.9
1,259,202 + Psest_1158 0.78 -0.6
1,259,202 + Psest_1158 0.78 +4.4
1,259,203 - Psest_1158 0.78 -2.9
1,259,203 - Psest_1158 0.78 -1.8
1,259,203 - Psest_1158 0.78 -0.1
1,259,203 - Psest_1158 0.78 -0.4
1,259,203 - Psest_1158 0.78 -2.0
1,259,203 - Psest_1158 0.78 +1.7
1,259,203 - Psest_1158 0.78 +3.9
1,259,203 - Psest_1158 0.78 +1.1
1,259,203 - Psest_1158 0.78 +0.5
1,259,203 - Psest_1158 0.78 -2.4
1,259,203 - Psest_1158 0.78 +0.4
1,259,204 + Psest_1158 0.78 -0.6
1,259,204 + Psest_1158 0.78 +1.9
1,259,204 + Psest_1158 0.78 +1.4
1,259,204 + Psest_1158 0.78 -2.6
1,259,204 + Psest_1158 0.78 -0.6
1,259,204 + Psest_1158 0.78 -1.1
1,259,204 + Psest_1158 0.78 -0.1
1,259,205 - Psest_1158 0.78 +0.1
1,259,205 - Psest_1158 0.78 -0.1
1,259,538 + -1.1
1,259,538 + -2.7
1,259,553 + +0.9
1,259,575 + -0.2
1,259,866 + Psest_1159 0.14 +0.2
1,259,990 + Psest_1159 0.23 -0.6
1,259,991 - Psest_1159 0.23 -1.5
1,259,991 - Psest_1159 0.23 +0.9
1,260,002 + Psest_1159 0.24 -1.5
1,260,002 + Psest_1159 0.24 -2.7
1,260,003 - Psest_1159 0.24 -2.5
1,260,136 + Psest_1159 0.34 +1.1
1,260,137 - Psest_1159 0.34 -3.6
1,260,206 + Psest_1159 0.39 -2.2
1,260,207 - Psest_1159 0.39 -2.4
1,260,284 + Psest_1159 0.45 -1.4
1,260,285 - Psest_1159 0.45 -2.9
1,260,335 + Psest_1159 0.49 +0.3
1,260,335 + Psest_1159 0.49 -1.5
1,260,335 + Psest_1159 0.49 -0.5
1,260,336 - Psest_1159 0.49 +0.4
1,260,511 + Psest_1159 0.62 +0.9
1,260,686 + Psest_1159 0.75 -1.5
1,260,686 + Psest_1159 0.75 +0.4
1,260,686 + Psest_1159 0.75 -1.1
1,260,686 + Psest_1159 0.75 +0.4
1,260,687 - Psest_1159 0.75 -2.1
1,260,687 - Psest_1159 0.75 -1.7
1,261,010 - +2.5
1,261,010 - -2.8
1,261,010 - +0.1
1,261,235 + -1.3
1,261,235 + +0.4
1,261,236 - +1.0
1,261,250 + Psest_1160 0.12 +1.4
1,261,251 - Psest_1160 0.12 -1.7
1,261,251 - Psest_1160 0.12 -1.0
1,261,364 + Psest_1160 0.31 -1.2
1,261,607 + Psest_1160 0.74 -0.6
1,261,607 + Psest_1160 0.74 -0.9
1,261,608 - Psest_1160 0.74 -1.5
1,261,899 + Psest_1161 0.16 -2.6
1,261,900 - Psest_1161 0.16 +1.1
1,261,900 - Psest_1161 0.16 -0.1

Or see this region's nucleotide sequence