Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4022

Experiment: RCH2 grown on a colony of N2F3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of N2F3
4,196,664	+				+0.7
4,196,677	+				+0.5
4,196,695	+				-2.7
4,196,696	-				+0.9
4,196,702	+				-2.0
4,196,742	+				+1.8
4,196,742	+				-1.7
4,196,743	-				-1.4
4,196,743	-				-3.3
4,196,825	+				-0.6
4,196,825	+				-1.9
4,196,828	+				+0.4
4,196,828	+				+0.4
4,196,828	+				-2.7
4,196,828	+				-0.9
4,196,828	+				-0.6
4,196,828	+				+0.8
4,196,828	+				+0.8
4,196,829	-				-1.9
4,196,829	-				+2.2
4,196,829	-				+0.0
4,196,829	-				-2.1
4,196,829	-				+0.4
4,196,829	-				-2.0
4,196,829	-				-2.0
4,196,841	+				-0.6
4,196,841	+				-0.0
4,196,842	-				-1.3
4,196,842	-				-2.8
4,196,842	-				-1.7
4,196,842	-				+1.1
4,196,842	-				-0.2
4,196,877	+		Psest_4020	0.12	-1.2
4,196,877	+		Psest_4020	0.12	+0.2
4,196,877	+		Psest_4020	0.12	-2.1
4,196,877	+		Psest_4020	0.12	+0.2
4,196,877	+		Psest_4020	0.12	-3.3
4,196,878	-		Psest_4020	0.13	+1.4
4,196,878	-		Psest_4020	0.13	-1.8
4,196,878	-		Psest_4020	0.13	+1.5
4,196,878	-		Psest_4020	0.13	-0.5
4,196,878	-		Psest_4020	0.13	+2.0
4,196,878	-		Psest_4020	0.13	+0.1
4,196,911	+		Psest_4020	0.32	-3.1
4,196,912	-		Psest_4020	0.32	-1.8
4,196,912	-		Psest_4020	0.32	+4.4
4,196,912	-		Psest_4020	0.32	+0.1
4,196,912	-		Psest_4020	0.32	+1.6
4,196,912	-		Psest_4020	0.32	+1.0
4,196,912	-		Psest_4020	0.32	-1.7
4,196,912	-		Psest_4020	0.32	-0.0
4,196,915	+		Psest_4020	0.34	-1.2
4,196,916	-		Psest_4020	0.34	+0.4
4,196,916	-		Psest_4020	0.34	-0.2
4,197,065	-				+2.8
4,197,087	+				+0.5
4,197,179	-		Psest_4021	0.33	-0.8
4,197,179	-		Psest_4021	0.33	+1.4
4,197,228	+		Psest_4021	0.46	-1.9
4,197,228	+		Psest_4021	0.46	+0.9
4,197,229	-		Psest_4021	0.47	+2.0
4,197,229	-		Psest_4021	0.47	+0.5
4,197,229	-		Psest_4021	0.47	+1.5
4,197,229	-		Psest_4021	0.47	-2.0
4,197,308	+		Psest_4021	0.68	+0.7
4,197,308	+		Psest_4021	0.68	+0.2
4,197,308	+		Psest_4021	0.68	-0.8
4,197,309	-		Psest_4021	0.68	-0.3
4,197,423	+				-1.9
4,197,424	-				-1.5
4,197,468	+				+0.8
4,197,469	-				+2.2
4,197,509	-				-2.2
4,197,529	+				+1.6
4,197,529	+				+2.0
4,197,529	+				-3.1
4,197,530	-				+0.5
4,197,530	-				+0.0
4,197,530	-				+0.5
4,197,530	-				-0.5
4,197,583	+				+0.3
4,197,583	+				+0.5
4,197,684	+		Psest_4022	0.14	-2.4
4,197,736	+		Psest_4022	0.18	+1.3
4,197,736	+		Psest_4022	0.18	-0.4
4,197,737	-		Psest_4022	0.18	-0.4
4,197,737	-		Psest_4022	0.18	+0.3
4,197,737	-		Psest_4022	0.18	+0.5
4,197,737	-		Psest_4022	0.18	-1.5
4,197,737	-		Psest_4022	0.18	+1.0
4,197,737	-		Psest_4022	0.18	-3.6
4,197,793	+		Psest_4022	0.22	-1.6
4,197,811	+		Psest_4022	0.23	-0.0
4,197,812	-		Psest_4022	0.23	-1.8
4,197,817	+		Psest_4022	0.23	-0.2
4,197,817	+		Psest_4022	0.23	+0.8
4,197,820	+		Psest_4022	0.24	-0.0
4,197,820	+		Psest_4022	0.24	-2.6
4,197,820	+		Psest_4022	0.24	+0.3
4,197,820	+		Psest_4022	0.24	-0.0
4,197,821	-		Psest_4022	0.24	-0.8
4,197,821	-		Psest_4022	0.24	-2.8
4,197,821	-		Psest_4022	0.24	+1.7
4,197,919	-		Psest_4022	0.30	-1.4
4,197,919	-		Psest_4022	0.30	-3.3
4,197,949	+		Psest_4022	0.32	+1.3
4,197,949	+		Psest_4022	0.32	+2.5
4,197,949	+		Psest_4022	0.32	+1.0
4,197,950	-		Psest_4022	0.32	+0.4
4,198,020	-		Psest_4022	0.37	-0.8
4,198,108	+		Psest_4022	0.43	-0.4
4,198,108	+		Psest_4022	0.43	-0.0
4,198,108	+		Psest_4022	0.43	-2.7
4,198,108	+		Psest_4022	0.43	-0.8
4,198,159	+		Psest_4022	0.46	+0.7
4,198,159	+		Psest_4022	0.46	+0.5
4,198,159	+		Psest_4022	0.46	-3.4
4,198,160	-		Psest_4022	0.46	-1.2
4,198,262	+		Psest_4022	0.53	+0.7
4,198,262	+		Psest_4022	0.53	-0.2
4,198,262	+		Psest_4022	0.53	+0.6
4,198,262	+		Psest_4022	0.53	-3.0
4,198,262	+		Psest_4022	0.53	-2.4
4,198,262	+		Psest_4022	0.53	+0.6
4,198,262	+		Psest_4022	0.53	-0.9
4,198,262	+		Psest_4022	0.53	+0.4
4,198,263	-		Psest_4022	0.53	-0.7
4,198,263	-		Psest_4022	0.53	+1.1
4,198,263	-		Psest_4022	0.53	+0.1
4,198,263	-		Psest_4022	0.53	+0.5
4,198,263	-		Psest_4022	0.53	-1.1
4,198,301	+		Psest_4022	0.56	-0.6
4,198,302	-		Psest_4022	0.56	-0.3
4,198,363	+		Psest_4022	0.60	-0.9
4,198,447	+		Psest_4022	0.66	-1.7
4,198,447	+		Psest_4022	0.66	+1.2
4,198,447	+		Psest_4022	0.66	+2.0
4,198,447	+		Psest_4022	0.66	-2.7
4,198,447	+		Psest_4022	0.66	-1.7
4,198,448	-		Psest_4022	0.66	-0.8
4,198,448	-		Psest_4022	0.66	+0.5
4,198,448	-		Psest_4022	0.66	-0.0
4,198,448	-		Psest_4022	0.66	+0.2
4,198,448	-		Psest_4022	0.66	+0.5
4,198,511	+		Psest_4022	0.70	-1.2
4,198,511	+		Psest_4022	0.70	-0.2
4,198,512	-		Psest_4022	0.70	-2.6
4,198,512	-		Psest_4022	0.70	+1.1
4,198,516	+		Psest_4022	0.70	-1.2
4,198,516	+		Psest_4022	0.70	+1.4
4,198,516	+		Psest_4022	0.70	-0.2
4,198,516	+		Psest_4022	0.70	+1.0
4,198,516	+		Psest_4022	0.70	-1.3
4,198,516	+		Psest_4022	0.70	-1.9
4,198,516	+		Psest_4022	0.70	-0.8
4,198,516	+		Psest_4022	0.70	-0.8
4,198,516	+		Psest_4022	0.70	-1.6
4,198,516	+		Psest_4022	0.70	-1.6
4,198,516	+		Psest_4022	0.70	-3.1
4,198,516	+		Psest_4022	0.70	+1.5
4,198,516	+		Psest_4022	0.70	+0.2
4,198,517	-		Psest_4022	0.70	+0.7
4,198,517	-		Psest_4022	0.70	-2.8
4,198,517	-		Psest_4022	0.70	-0.8
4,198,517	-		Psest_4022	0.70	+0.9
4,198,517	-		Psest_4022	0.70	-0.4
4,198,517	-		Psest_4022	0.70	-0.6
4,198,517	-		Psest_4022	0.70	-1.5
4,198,517	-		Psest_4022	0.70	+0.1
4,198,517	-		Psest_4022	0.70	-0.8
4,198,517	-		Psest_4022	0.70	-0.2
4,198,517	-		Psest_4022	0.70	+0.3
4,198,517	-		Psest_4022	0.70	+1.0
4,198,633	+		Psest_4022	0.78	-2.6
4,198,633	+		Psest_4022	0.78	+1.0
4,198,634	-		Psest_4022	0.78	+0.7
4,198,681	+		Psest_4022	0.81	+0.8
4,198,899	-				+2.0
4,198,948	+				-0.1
4,198,948	+				+1.1
4,198,948	+				+2.4
4,198,948	+				-0.2
4,198,949	-				-0.5
4,198,949	-				-1.8
4,198,949	-				+0.5
4,198,949	-				-0.8
4,198,954	+				-1.5
4,198,955	-				+1.0
4,198,955	-				+1.6
4,198,959	-				-0.6
4,198,959	-				-0.6
4,198,959	-				-0.8
4,199,195	-		Psest_4023	0.35	-2.6
4,199,195	-		Psest_4023	0.35	-0.8
4,199,206	-		Psest_4023	0.37	+0.1
4,199,393	+		Psest_4023	0.69	+2.2
4,199,393	+		Psest_4023	0.69	-1.6
4,199,455	-		Psest_4023	0.80	-2.1
4,199,490	+		Psest_4023	0.86	-1.1
4,199,490	+		Psest_4023	0.86	+1.1
4,199,490	+		Psest_4023	0.86	-3.3
4,199,490	+		Psest_4023	0.86	-1.0
4,199,490	+		Psest_4023	0.86	-3.4
4,199,490	+		Psest_4023	0.86	-0.2
4,199,490	+		Psest_4023	0.86	-2.7
4,199,491	-		Psest_4023	0.86	-1.4
4,199,491	-		Psest_4023	0.86	+0.2
4,199,521	+				-3.0
4,199,521	+				+0.7
4,199,522	-				-1.7
4,199,522	-				-2.4
4,199,522	-				-0.8
4,199,522	-				+0.1
4,199,532	+				+0.6
4,199,532	+				+1.1
4,199,532	+				-2.8
4,199,532	+				+2.0
4,199,532	+				-3.4
4,199,533	-				+2.0
4,199,533	-				-0.6
4,199,533	-				-3.6
4,199,575	+				+1.0
4,199,575	+				-2.4
4,199,575	+				+1.2
4,199,575	+				+1.0
4,199,575	+				+1.1
4,199,575	+				-0.9
4,199,575	+				+0.8
4,199,576	-				-0.4
4,199,576	-				-1.3
4,199,576	-				-0.8
4,199,643	+				-1.4
4,199,643	+				+1.8
4,199,643	+				-1.0
4,199,643	+				-1.7
4,199,643	+				+0.8
4,199,644	-				-3.1
4,199,644	-				+0.1
4,199,645	+				-1.0
4,199,652	-				-1.4
4,199,658	-				+1.2
4,199,725	-				+0.5
4,199,740	+				-0.1
4,199,759	-				-2.9
4,199,761	+				+2.1
4,199,761	+				-1.6
4,199,777	-				-1.1
4,199,777	-				-0.8
4,199,784	+				-2.5
4,199,784	+				-2.8
4,199,784	+				+1.3
4,199,785	-				-1.9
4,199,785	-				+1.5
4,199,864	+				+0.2
4,199,864	+				+1.5
4,199,864	+				-2.6
4,199,865	-				+0.1
4,199,865	-				+0.0
4,199,865	-				+1.0
4,199,865	-				+2.0
4,199,865	-				-1.9
4,199,865	-				-0.1
4,199,900	-				-3.2