Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0431 and Psest_0432 overlap by 7 nucleotides Psest_0432 and Psest_0434 are separated by 430 nucleotides
Psest_0431: Psest_0431 - Lactate dehydrogenase and related dehydrogenases, at 468,830 to 469,840
_0431
Psest_0432: Psest_0432 - Transcriptional regulator, at 469,834 to 470,703
_0432
Psest_0434: Psest_0434 - hypothetical protein, at 471,134 to 471,760
_0434
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 468.847 kb on + strand at 468.848 kb on - strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.849 kb on + strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.850 kb on - strand at 468.861 kb on + strand at 468.862 kb on - strand at 469.038 kb on + strand, within Psest_0431 at 469.245 kb on - strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.267 kb on + strand, within Psest_0431 at 469.506 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.527 kb on + strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.528 kb on - strand, within Psest_0431 at 469.548 kb on + strand, within Psest_0431 at 469.602 kb on - strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.614 kb on + strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.615 kb on - strand, within Psest_0431 at 469.687 kb on + strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.688 kb on - strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.707 kb on + strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.708 kb on - strand, within Psest_0431 at 469.866 kb on - strand at 470.008 kb on - strand, within Psest_0432 at 470.072 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.128 kb on + strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.129 kb on - strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.155 kb on + strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.156 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.229 kb on - strand, within Psest_0432 at 470.271 kb on - strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.363 kb on + strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.364 kb on - strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.440 kb on + strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.441 kb on - strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.552 kb on + strand, within Psest_0432 at 470.553 kb on - strand, within Psest_0432 at 470.583 kb on - strand, within Psest_0432 at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.675 kb on + strand at 470.676 kb on - strand at 470.676 kb on - strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.693 kb on + strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.782 kb on + strand at 470.783 kb on - strand at 470.783 kb on - strand at 470.831 kb on - strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.948 kb on - strand at 470.989 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.135 kb on + strand at 471.135 kb on + strand at 471.135 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.175 kb on - strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.184 kb on + strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.185 kb on - strand at 471.188 kb on + strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.189 kb on - strand at 471.191 kb on + strand at 471.191 kb on + strand at 471.191 kb on + strand at 471.192 kb on - strand at 471.192 kb on - strand at 471.192 kb on - strand at 471.227 kb on - strand, within Psest_0434 at 471.227 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.263 kb on - strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.306 kb on + strand, within Psest_0434 at 471.307 kb on - strand, within Psest_0434 at 471.307 kb on - strand, within Psest_0434 at 471.309 kb on + strand, within Psest_0434 at 471.309 kb on + strand, within Psest_0434 at 471.378 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.395 kb on - strand, within Psest_0434 at 471.429 kb on + strand, within Psest_0434 at 471.430 kb on - strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.443 kb on + strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.444 kb on - strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.460 kb on + strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.461 kb on - strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.494 kb on + strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.495 kb on - strand, within Psest_0434 at 471.521 kb on - strand, within Psest_0434 at 471.551 kb on - strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.554 kb on + strand, within Psest_0434 at 471.555 kb on - strand, within Psest_0434 at 471.574 kb on - strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.597 kb on + strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434 at 471.598 kb on - strand, within Psest_0434
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 468,847 + -2.1 468,848 - -1.0 468,849 + -0.2 468,849 + +0.9 468,849 + -0.2 468,849 + -0.4 468,849 + -2.9 468,849 + -0.9 468,850 - -2.1 468,850 - +0.1 468,850 - -0.7 468,850 - -1.0 468,850 - +2.6 468,861 + +1.0 468,862 - +0.1 469,038 + Psest_0431 0.21 +0.0 469,245 - Psest_0431 0.41 +0.4 469,267 + Psest_0431 0.43 -2.0 469,267 + Psest_0431 0.43 +0.6 469,506 + Psest_0431 0.67 +2.1 469,527 + Psest_0431 0.69 -1.8 469,527 + Psest_0431 0.69 -2.0 469,527 + Psest_0431 0.69 +1.6 469,527 + Psest_0431 0.69 -0.5 469,527 + Psest_0431 0.69 -1.2 469,528 - Psest_0431 0.69 -0.1 469,528 - Psest_0431 0.69 +0.7 469,528 - Psest_0431 0.69 -3.0 469,528 - Psest_0431 0.69 -0.8 469,528 - Psest_0431 0.69 +0.7 469,528 - Psest_0431 0.69 -0.4 469,548 + Psest_0431 0.71 -2.3 469,602 - Psest_0431 0.76 -0.9 469,614 + Psest_0431 0.78 +0.8 469,614 + Psest_0431 0.78 +0.4 469,615 - Psest_0431 0.78 -0.5 469,615 - Psest_0431 0.78 +0.1 469,615 - Psest_0431 0.78 -0.0 469,615 - Psest_0431 0.78 +0.9 469,687 + Psest_0431 0.85 +1.2 469,688 - Psest_0431 0.85 +0.2 469,688 - Psest_0431 0.85 -2.0 469,707 + Psest_0431 0.87 -0.4 469,707 + Psest_0431 0.87 -2.7 469,707 + Psest_0431 0.87 -0.5 469,707 + Psest_0431 0.87 -1.6 469,707 + Psest_0431 0.87 -0.3 469,707 + Psest_0431 0.87 -0.9 469,707 + Psest_0431 0.87 +1.3 469,707 + Psest_0431 0.87 -0.3 469,708 - Psest_0431 0.87 +0.2 469,708 - Psest_0431 0.87 +0.2 469,708 - Psest_0431 0.87 -0.1 469,708 - Psest_0431 0.87 +0.6 469,708 - Psest_0431 0.87 +1.2 469,708 - Psest_0431 0.87 -1.5 469,708 - Psest_0431 0.87 +0.4 469,708 - Psest_0431 0.87 -0.4 469,866 - -1.6 470,008 - Psest_0432 0.20 -0.6 470,072 + Psest_0432 0.27 +0.5 470,128 + Psest_0432 0.34 -0.7 470,128 + Psest_0432 0.34 +0.4 470,128 + Psest_0432 0.34 +2.8 470,128 + Psest_0432 0.34 -0.6 470,128 + Psest_0432 0.34 +0.8 470,129 - Psest_0432 0.34 -0.5 470,129 - Psest_0432 0.34 +1.4 470,129 - Psest_0432 0.34 -0.6 470,129 - Psest_0432 0.34 -1.0 470,129 - Psest_0432 0.34 -2.2 470,129 - Psest_0432 0.34 +0.4 470,129 - Psest_0432 0.34 -0.5 470,129 - Psest_0432 0.34 +0.3 470,129 - Psest_0432 0.34 +1.3 470,155 + Psest_0432 0.37 +0.8 470,155 + Psest_0432 0.37 +0.6 470,155 + Psest_0432 0.37 +3.0 470,155 + Psest_0432 0.37 -0.4 470,155 + Psest_0432 0.37 +0.0 470,155 + Psest_0432 0.37 +0.3 470,156 - Psest_0432 0.37 +1.5 470,156 - Psest_0432 0.37 +0.2 470,156 - Psest_0432 0.37 -0.6 470,156 - Psest_0432 0.37 +1.3 470,156 - Psest_0432 0.37 +0.4 470,156 - Psest_0432 0.37 +1.2 470,229 - Psest_0432 0.45 +2.5 470,229 - Psest_0432 0.45 +1.9 470,229 - Psest_0432 0.45 +1.3 470,271 - Psest_0432 0.50 -1.1 470,363 + Psest_0432 0.61 +0.4 470,363 + Psest_0432 0.61 -0.4 470,363 + Psest_0432 0.61 +4.0 470,363 + Psest_0432 0.61 -1.5 470,363 + Psest_0432 0.61 +0.2 470,363 + Psest_0432 0.61 +1.2 470,363 + Psest_0432 0.61 -0.8 470,363 + Psest_0432 0.61 +1.3 470,363 + Psest_0432 0.61 +2.6 470,364 - Psest_0432 0.61 -0.4 470,364 - Psest_0432 0.61 -0.4 470,364 - Psest_0432 0.61 -0.6 470,364 - Psest_0432 0.61 +2.5 470,364 - Psest_0432 0.61 +0.4 470,440 + Psest_0432 0.70 +0.1 470,440 + Psest_0432 0.70 -0.6 470,440 + Psest_0432 0.70 -1.4 470,441 - Psest_0432 0.70 +0.4 470,441 - Psest_0432 0.70 +1.9 470,552 + Psest_0432 0.83 +0.2 470,552 + Psest_0432 0.83 +1.0 470,552 + Psest_0432 0.83 +0.0 470,553 - Psest_0432 0.83 -1.1 470,583 - Psest_0432 0.86 +0.1 470,675 + -0.4 470,675 + +1.5 470,675 + +0.3 470,675 + -0.6 470,676 - -1.0 470,676 - -1.0 470,693 + -1.5 470,693 + -1.0 470,693 + -0.8 470,693 + -2.0 470,693 + +0.0 470,693 + -1.6 470,694 - +0.5 470,694 - +2.8 470,694 - +0.7 470,694 - +0.4 470,782 + +2.3 470,783 - -1.2 470,783 - +0.8 470,831 - -0.3 470,947 + +0.9 470,947 + +0.4 470,947 + -0.9 470,947 + -0.4 470,947 + +0.7 470,947 + -0.5 470,947 + -0.4 470,947 + +1.1 470,948 - +0.3 470,948 - +0.4 470,948 - +0.3 470,948 - +1.3 470,948 - -0.2 470,989 + -2.5 471,123 + -0.6 471,123 + -0.3 471,123 + -1.2 471,123 + -0.2 471,124 - +1.1 471,124 - +0.1 471,135 + -0.8 471,135 + -2.5 471,135 + -0.1 471,174 + -1.4 471,174 + -0.2 471,174 + -0.8 471,174 + +0.4 471,174 + +1.5 471,175 - +0.9 471,175 - -1.2 471,175 - +0.6 471,175 - +2.5 471,175 - -2.1 471,175 - +0.7 471,175 - -1.2 471,184 + -1.8 471,184 + -1.5 471,184 + +1.2 471,184 + +2.8 471,184 + -1.8 471,185 - -0.3 471,185 - +0.2 471,185 - -0.2 471,185 - -2.1 471,188 + -0.2 471,189 - -0.9 471,189 - -0.5 471,189 - +1.2 471,189 - -0.1 471,189 - -0.3 471,189 - -0.3 471,189 - -1.7 471,191 + -0.8 471,191 + -1.1 471,191 + -0.3 471,192 - +1.2 471,192 - +2.2 471,192 - +1.4 471,227 - Psest_0434 0.15 +0.1 471,227 - Psest_0434 0.15 -0.1 471,263 - Psest_0434 0.21 -1.9 471,263 - Psest_0434 0.21 +0.9 471,263 - Psest_0434 0.21 -1.6 471,306 + Psest_0434 0.27 +0.6 471,306 + Psest_0434 0.27 +2.8 471,306 + Psest_0434 0.27 +1.2 471,307 - Psest_0434 0.28 -0.1 471,307 - Psest_0434 0.28 +0.5 471,309 + Psest_0434 0.28 -0.7 471,309 + Psest_0434 0.28 +1.1 471,378 - Psest_0434 0.39 -0.4 471,395 - Psest_0434 0.42 -1.8 471,395 - Psest_0434 0.42 -0.4 471,395 - Psest_0434 0.42 +0.9 471,429 + Psest_0434 0.47 -1.5 471,430 - Psest_0434 0.47 -1.9 471,443 + Psest_0434 0.49 -2.3 471,443 + Psest_0434 0.49 -1.2 471,444 - Psest_0434 0.49 -0.9 471,444 - Psest_0434 0.49 -1.2 471,444 - Psest_0434 0.49 -0.5 471,460 + Psest_0434 0.52 -0.9 471,460 + Psest_0434 0.52 +0.9 471,460 + Psest_0434 0.52 -0.3 471,460 + Psest_0434 0.52 +0.3 471,460 + Psest_0434 0.52 -1.0 471,460 + Psest_0434 0.52 -1.1 471,460 + Psest_0434 0.52 -2.1 471,461 - Psest_0434 0.52 +1.6 471,461 - Psest_0434 0.52 +0.2 471,461 - Psest_0434 0.52 +0.6 471,461 - Psest_0434 0.52 +0.7 471,461 - Psest_0434 0.52 +0.1 471,461 - Psest_0434 0.52 -0.1 471,461 - Psest_0434 0.52 +0.6 471,494 + Psest_0434 0.57 -0.2 471,494 + Psest_0434 0.57 -0.5 471,494 + Psest_0434 0.57 +3.1 471,494 + Psest_0434 0.57 -2.8 471,494 + Psest_0434 0.57 -0.1 471,494 + Psest_0434 0.57 +2.2 471,494 + Psest_0434 0.57 -1.3 471,494 + Psest_0434 0.57 -0.1 471,494 + Psest_0434 0.57 +0.3 471,494 + Psest_0434 0.57 -0.9 471,494 + Psest_0434 0.57 -1.6 471,494 + Psest_0434 0.57 -0.4 471,495 - Psest_0434 0.58 +0.5 471,495 - Psest_0434 0.58 +0.4 471,495 - Psest_0434 0.58 +0.4 471,495 - Psest_0434 0.58 +0.7 471,495 - Psest_0434 0.58 -0.4 471,495 - Psest_0434 0.58 +0.2 471,495 - Psest_0434 0.58 -2.5 471,495 - Psest_0434 0.58 -1.8 471,495 - Psest_0434 0.58 +1.1 471,521 - Psest_0434 0.62 +0.9 471,551 - Psest_0434 0.67 +0.9 471,554 + Psest_0434 0.67 +0.4 471,554 + Psest_0434 0.67 -0.2 471,554 + Psest_0434 0.67 +1.5 471,554 + Psest_0434 0.67 +0.6 471,554 + Psest_0434 0.67 -2.6 471,554 + Psest_0434 0.67 +1.8 471,554 + Psest_0434 0.67 -1.2 471,554 + Psest_0434 0.67 -1.9 471,555 - Psest_0434 0.67 -0.7 471,574 - Psest_0434 0.70 +0.9 471,597 + Psest_0434 0.74 -0.4 471,597 + Psest_0434 0.74 +0.8 471,598 - Psest_0434 0.74 -3.5 471,598 - Psest_0434 0.74 +1.6 471,598 - Psest_0434 0.74 -0.4
Or see this region's nucleotide sequence