Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2924

Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2922 and Psest_2923 are separated by 48 nucleotidesPsest_2923 and Psest_2924 are separated by 9 nucleotidesPsest_2924 and Psest_2925 are separated by 2 nucleotidesPsest_2925 and Psest_2926 are separated by 149 nucleotides Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919 _2922 Psest_2923: Psest_2923 - hypothetical protein, at 3,117,968 to 3,118,273 _2923 Psest_2924: Psest_2924 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,118,283 to 3,118,981 _2924 Psest_2925: Psest_2925 - Protein of unknown function (DUF1264)., at 3,118,984 to 3,119,799 _2925 Psest_2926: Psest_2926 - TIGR03440 family protein, at 3,119,949 to 3,121,244 _2926 Position (kb) 3118 3119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3117.389 kb on + strand, within Psest_2922at 3117.389 kb on + strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.409 kb on + strand, within Psest_2922at 3117.562 kb on + strandat 3117.562 kb on + strandat 3117.600 kb on + strandat 3117.600 kb on + strandat 3117.601 kb on - strandat 3117.860 kb on + strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3118.066 kb on + strand, within Psest_2923at 3118.066 kb on + strand, within Psest_2923at 3118.268 kb on + strandat 3118.509 kb on - strand, within Psest_2924at 3118.529 kb on + strand, within Psest_2924at 3118.530 kb on - strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.859 kb on + strand, within Psest_2924at 3118.860 kb on - strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924at 3118.980 kb on - strandat 3119.163 kb on + strand, within Psest_2925at 3119.164 kb on - strand, within Psest_2925at 3119.330 kb on + strand, within Psest_2925at 3119.331 kb on - strand, within Psest_2925at 3119.331 kb on - strand, within Psest_2925at 3119.331 kb on - strand, within Psest_2925at 3119.331 kb on - strand, within Psest_2925at 3119.415 kb on - strand, within Psest_2925at 3119.483 kb on + strand, within Psest_2925at 3119.483 kb on + strand, within Psest_2925at 3119.483 kb on + strand, within Psest_2925at 3119.483 kb on + strand, within Psest_2925at 3119.483 kb on + strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.484 kb on - strand, within Psest_2925at 3119.525 kb on + strand, within Psest_2925at 3119.526 kb on - strand, within Psest_2925at 3119.567 kb on + strand, within Psest_2925at 3119.567 kb on + strand, within Psest_2925at 3119.567 kb on + strand, within Psest_2925at 3119.567 kb on + strand, within Psest_2925at 3119.568 kb on - strand, within Psest_2925at 3119.568 kb on - strand, within Psest_2925at 3119.568 kb on - strand, within Psest_2925at 3119.568 kb on - strand, within Psest_2925at 3119.606 kb on + strand, within Psest_2925at 3119.606 kb on + strand, within Psest_2925at 3119.606 kb on + strand, within Psest_2925at 3119.606 kb on + strand, within Psest_2925at 3119.606 kb on + strand, within Psest_2925at 3119.607 kb on - strand, within Psest_2925at 3119.607 kb on - strand, within Psest_2925at 3119.607 kb on - strand, within Psest_2925at 3119.729 kb on + strandat 3119.788 kb on + strandat 3119.789 kb on - strandat 3119.823 kb on + strandat 3119.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4
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3,117,389 + Psest_2922 0.88 -0.7
3,117,389 + Psest_2922 0.88 -0.6
3,117,390 - Psest_2922 0.88 +1.0
3,117,390 - Psest_2922 0.88 +0.3
3,117,390 - Psest_2922 0.88 +0.1
3,117,390 - Psest_2922 0.88 -0.3
3,117,393 + Psest_2922 0.88 -0.2
3,117,393 + Psest_2922 0.88 +0.6
3,117,393 + Psest_2922 0.88 -0.7
3,117,393 + Psest_2922 0.88 +1.2
3,117,393 + Psest_2922 0.88 -0.5
3,117,394 - Psest_2922 0.88 -0.0
3,117,394 - Psest_2922 0.88 +2.9
3,117,394 - Psest_2922 0.88 +0.5
3,117,409 + Psest_2922 0.88 -0.6
3,117,562 + -0.5
3,117,562 + -0.1
3,117,600 + +2.5
3,117,600 + -0.9
3,117,601 - +0.1
3,117,860 + -0.3
3,117,861 - +1.8
3,117,861 - +1.3
3,117,861 - +1.2
3,117,924 + +0.0
3,117,924 + -0.8
3,117,924 + -0.3
3,117,924 + -0.7
3,117,924 + -0.3
3,117,924 + -1.9
3,117,924 + +0.9
3,117,924 + +2.6
3,117,924 + -0.8
3,117,925 - +0.1
3,117,925 - -0.4
3,117,925 - +1.8
3,117,925 - +1.4
3,117,925 - -0.1
3,118,066 + Psest_2923 0.32 -0.2
3,118,066 + Psest_2923 0.32 -0.1
3,118,268 + -0.9
3,118,509 - Psest_2924 0.32 +0.2
3,118,529 + Psest_2924 0.35 +0.1
3,118,530 - Psest_2924 0.35 -0.4
3,118,727 + Psest_2924 0.64 -0.6
3,118,727 + Psest_2924 0.64 -1.3
3,118,727 + Psest_2924 0.64 -0.3
3,118,859 + Psest_2924 0.82 -1.7
3,118,860 - Psest_2924 0.83 -1.3
3,118,898 + Psest_2924 0.88 +0.0
3,118,898 + Psest_2924 0.88 -0.6
3,118,980 - -0.9
3,119,163 + Psest_2925 0.22 -1.3
3,119,164 - Psest_2925 0.22 -1.3
3,119,330 + Psest_2925 0.42 -0.9
3,119,331 - Psest_2925 0.43 -0.7
3,119,331 - Psest_2925 0.43 +1.4
3,119,331 - Psest_2925 0.43 -1.0
3,119,331 - Psest_2925 0.43 -1.2
3,119,415 - Psest_2925 0.53 -1.3
3,119,483 + Psest_2925 0.61 -0.8
3,119,483 + Psest_2925 0.61 -1.8
3,119,483 + Psest_2925 0.61 -1.8
3,119,483 + Psest_2925 0.61 -2.1
3,119,483 + Psest_2925 0.61 +0.2
3,119,484 - Psest_2925 0.61 -1.6
3,119,484 - Psest_2925 0.61 +0.4
3,119,484 - Psest_2925 0.61 -0.6
3,119,484 - Psest_2925 0.61 +1.2
3,119,484 - Psest_2925 0.61 -0.6
3,119,484 - Psest_2925 0.61 +0.5
3,119,484 - Psest_2925 0.61 -0.1
3,119,484 - Psest_2925 0.61 +1.3
3,119,484 - Psest_2925 0.61 +0.4
3,119,484 - Psest_2925 0.61 +1.7
3,119,484 - Psest_2925 0.61 +2.2
3,119,484 - Psest_2925 0.61 -0.1
3,119,525 + Psest_2925 0.66 -0.2
3,119,526 - Psest_2925 0.66 -2.6
3,119,567 + Psest_2925 0.71 +2.0
3,119,567 + Psest_2925 0.71 -0.4
3,119,567 + Psest_2925 0.71 +2.5
3,119,567 + Psest_2925 0.71 +1.8
3,119,568 - Psest_2925 0.72 +1.0
3,119,568 - Psest_2925 0.72 +2.4
3,119,568 - Psest_2925 0.72 -1.1
3,119,568 - Psest_2925 0.72 +1.2
3,119,606 + Psest_2925 0.76 -1.0
3,119,606 + Psest_2925 0.76 -1.2
3,119,606 + Psest_2925 0.76 +0.2
3,119,606 + Psest_2925 0.76 -1.0
3,119,606 + Psest_2925 0.76 +0.1
3,119,607 - Psest_2925 0.76 -0.0
3,119,607 - Psest_2925 0.76 -0.3
3,119,607 - Psest_2925 0.76 -1.3
3,119,729 + +0.9
3,119,788 + +1.2
3,119,789 - -0.7
3,119,823 + -1.1
3,119,824 - -0.6

Or see this region's nucleotide sequence