Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0271 and Psest_0272 are separated by 52 nucleotides Psest_0272 and Psest_0273 are separated by 94 nucleotides
Psest_0271: Psest_0271 - ornithine carbamoyltransferase, at 287,081 to 288,091
_0271
Psest_0272: Psest_0272 - arginine deiminase, at 288,144 to 289,397
_0272
Psest_0273: Psest_0273 - arginine/ornithine antiporter, at 289,492 to 290,919
_0273
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.174 kb on + strand at 287.174 kb on + strand at 287.175 kb on - strand at 287.214 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.393 kb on + strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.394 kb on - strand, within Psest_0271 at 287.582 kb on - strand, within Psest_0271 at 287.611 kb on - strand, within Psest_0271 at 287.616 kb on + strand, within Psest_0271 at 287.616 kb on + strand, within Psest_0271 at 287.617 kb on - strand, within Psest_0271 at 287.617 kb on - strand, within Psest_0271 at 287.691 kb on + strand, within Psest_0271 at 287.692 kb on - strand, within Psest_0271 at 287.692 kb on - strand, within Psest_0271 at 287.772 kb on + strand, within Psest_0271 at 287.773 kb on - strand, within Psest_0271 at 287.773 kb on - strand, within Psest_0271 at 287.788 kb on - strand, within Psest_0271 at 287.788 kb on - strand, within Psest_0271 at 287.788 kb on - strand, within Psest_0271 at 287.861 kb on - strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.862 kb on + strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.863 kb on - strand, within Psest_0271 at 287.985 kb on + strand, within Psest_0271 at 287.985 kb on + strand, within Psest_0271 at 287.985 kb on + strand, within Psest_0271 at 287.985 kb on + strand, within Psest_0271 at 287.985 kb on + strand, within Psest_0271 at 287.986 kb on - strand, within Psest_0271 at 287.986 kb on - strand, within Psest_0271 at 287.986 kb on - strand, within Psest_0271 at 288.024 kb on + strand at 288.079 kb on + strand at 288.148 kb on + strand at 288.149 kb on - strand at 288.230 kb on + strand at 288.358 kb on + strand, within Psest_0272 at 288.358 kb on + strand, within Psest_0272 at 288.358 kb on + strand, within Psest_0272 at 288.359 kb on - strand, within Psest_0272 at 288.359 kb on - strand, within Psest_0272 at 288.359 kb on - strand, within Psest_0272 at 288.359 kb on - strand, within Psest_0272 at 288.359 kb on - strand, within Psest_0272 at 288.814 kb on + strand, within Psest_0272 at 288.814 kb on + strand, within Psest_0272 at 288.887 kb on - strand, within Psest_0272 at 288.887 kb on - strand, within Psest_0272 at 288.887 kb on - strand, within Psest_0272 at 288.961 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.080 kb on + strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.081 kb on - strand, within Psest_0272 at 289.341 kb on + strand at 289.341 kb on + strand at 289.341 kb on + strand at 289.341 kb on + strand at 289.341 kb on + strand at 289.402 kb on + strand at 289.402 kb on + strand at 289.403 kb on - strand at 289.403 kb on - strand at 289.403 kb on - strand at 289.474 kb on + strand at 289.514 kb on + strand at 289.514 kb on + strand at 289.515 kb on - strand at 289.515 kb on - strand at 289.515 kb on - strand at 289.543 kb on + strand at 289.544 kb on - strand at 289.640 kb on + strand, within Psest_0273 at 289.640 kb on + strand, within Psest_0273 at 289.640 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.660 kb on + strand, within Psest_0273 at 289.661 kb on - strand, within Psest_0273 at 289.661 kb on - strand, within Psest_0273 at 289.661 kb on - strand, within Psest_0273 at 289.661 kb on - strand, within Psest_0273 at 289.661 kb on - strand, within Psest_0273 at 289.664 kb on + strand, within Psest_0273 at 289.664 kb on + strand, within Psest_0273 at 289.664 kb on + strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.665 kb on - strand, within Psest_0273 at 289.682 kb on + strand, within Psest_0273 at 289.683 kb on - strand, within Psest_0273 at 289.700 kb on + strand, within Psest_0273 at 289.701 kb on - strand, within Psest_0273 at 289.761 kb on - strand, within Psest_0273 at 289.811 kb on + strand, within Psest_0273 at 289.812 kb on - strand, within Psest_0273 at 289.841 kb on + strand, within Psest_0273 at 289.841 kb on + strand, within Psest_0273 at 289.856 kb on + strand, within Psest_0273 at 289.856 kb on + strand, within Psest_0273 at 289.856 kb on + strand, within Psest_0273 at 290.290 kb on + strand, within Psest_0273 at 290.342 kb on - strand, within Psest_0273 at 290.342 kb on - strand, within Psest_0273
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 287,174 + +0.6 287,174 + -0.3 287,175 - -0.9 287,214 + Psest_0271 0.13 -3.0 287,393 + Psest_0271 0.31 +0.0 287,393 + Psest_0271 0.31 +0.8 287,393 + Psest_0271 0.31 -0.7 287,393 + Psest_0271 0.31 +0.5 287,393 + Psest_0271 0.31 -0.8 287,393 + Psest_0271 0.31 +0.7 287,393 + Psest_0271 0.31 +1.8 287,393 + Psest_0271 0.31 -0.2 287,393 + Psest_0271 0.31 -0.5 287,394 - Psest_0271 0.31 +1.9 287,394 - Psest_0271 0.31 -0.8 287,394 - Psest_0271 0.31 -0.9 287,394 - Psest_0271 0.31 -0.4 287,394 - Psest_0271 0.31 -1.1 287,394 - Psest_0271 0.31 -1.4 287,394 - Psest_0271 0.31 +1.4 287,394 - Psest_0271 0.31 +0.0 287,394 - Psest_0271 0.31 -0.1 287,582 - Psest_0271 0.50 -0.4 287,611 - Psest_0271 0.52 -0.5 287,616 + Psest_0271 0.53 +1.7 287,616 + Psest_0271 0.53 +1.7 287,617 - Psest_0271 0.53 +0.1 287,617 - Psest_0271 0.53 -0.7 287,691 + Psest_0271 0.60 -0.9 287,692 - Psest_0271 0.60 -0.2 287,692 - Psest_0271 0.60 -1.3 287,772 + Psest_0271 0.68 -1.7 287,773 - Psest_0271 0.68 +1.8 287,773 - Psest_0271 0.68 +0.3 287,788 - Psest_0271 0.70 -0.1 287,788 - Psest_0271 0.70 -0.9 287,788 - Psest_0271 0.70 -0.1 287,861 - Psest_0271 0.77 +1.3 287,862 + Psest_0271 0.77 +0.0 287,862 + Psest_0271 0.77 +1.2 287,862 + Psest_0271 0.77 -0.6 287,862 + Psest_0271 0.77 +0.7 287,862 + Psest_0271 0.77 -0.5 287,862 + Psest_0271 0.77 +1.9 287,862 + Psest_0271 0.77 -1.3 287,862 + Psest_0271 0.77 +0.9 287,862 + Psest_0271 0.77 -0.8 287,862 + Psest_0271 0.77 +1.4 287,862 + Psest_0271 0.77 +1.5 287,863 - Psest_0271 0.77 -1.4 287,863 - Psest_0271 0.77 -0.2 287,863 - Psest_0271 0.77 +1.3 287,863 - Psest_0271 0.77 +0.7 287,863 - Psest_0271 0.77 +0.4 287,863 - Psest_0271 0.77 +0.1 287,863 - Psest_0271 0.77 +0.1 287,863 - Psest_0271 0.77 -1.9 287,863 - Psest_0271 0.77 +0.2 287,863 - Psest_0271 0.77 +2.4 287,985 + Psest_0271 0.89 +0.4 287,985 + Psest_0271 0.89 +0.0 287,985 + Psest_0271 0.89 -1.9 287,985 + Psest_0271 0.89 -1.3 287,985 + Psest_0271 0.89 -1.2 287,986 - Psest_0271 0.90 -0.8 287,986 - Psest_0271 0.90 -1.6 287,986 - Psest_0271 0.90 +1.2 288,024 + +0.4 288,079 + -2.0 288,148 + -0.1 288,149 - +2.8 288,230 + -1.7 288,358 + Psest_0272 0.17 -1.5 288,358 + Psest_0272 0.17 +1.2 288,358 + Psest_0272 0.17 -0.7 288,359 - Psest_0272 0.17 -0.1 288,359 - Psest_0272 0.17 -0.3 288,359 - Psest_0272 0.17 -1.3 288,359 - Psest_0272 0.17 +0.2 288,359 - Psest_0272 0.17 +1.1 288,814 + Psest_0272 0.53 -0.2 288,814 + Psest_0272 0.53 +1.1 288,887 - Psest_0272 0.59 +0.1 288,887 - Psest_0272 0.59 -1.6 288,887 - Psest_0272 0.59 -0.1 288,961 + Psest_0272 0.65 +0.9 289,080 + Psest_0272 0.75 -0.3 289,080 + Psest_0272 0.75 -0.3 289,080 + Psest_0272 0.75 -1.6 289,080 + Psest_0272 0.75 +1.1 289,080 + Psest_0272 0.75 +0.4 289,080 + Psest_0272 0.75 -2.7 289,080 + Psest_0272 0.75 -1.8 289,081 - Psest_0272 0.75 -0.1 289,081 - Psest_0272 0.75 -1.9 289,081 - Psest_0272 0.75 -1.4 289,081 - Psest_0272 0.75 +1.1 289,081 - Psest_0272 0.75 +0.8 289,081 - Psest_0272 0.75 -1.9 289,081 - Psest_0272 0.75 +1.1 289,081 - Psest_0272 0.75 -0.1 289,341 + -1.6 289,341 + +0.3 289,341 + -1.6 289,341 + +2.1 289,341 + -1.6 289,402 + +0.4 289,402 + +0.2 289,403 - -1.4 289,403 - +1.1 289,403 - -0.9 289,474 + -1.3 289,514 + +0.6 289,514 + -1.0 289,515 - -0.3 289,515 - -1.8 289,515 - +1.1 289,543 + +0.3 289,544 - -2.5 289,640 + Psest_0273 0.10 +1.2 289,640 + Psest_0273 0.10 -1.1 289,640 + Psest_0273 0.10 -0.7 289,660 + Psest_0273 0.12 +2.2 289,660 + Psest_0273 0.12 -1.7 289,660 + Psest_0273 0.12 -0.9 289,660 + Psest_0273 0.12 +0.2 289,660 + Psest_0273 0.12 +0.4 289,660 + Psest_0273 0.12 -0.9 289,661 - Psest_0273 0.12 -0.1 289,661 - Psest_0273 0.12 +0.5 289,661 - Psest_0273 0.12 -0.4 289,661 - Psest_0273 0.12 +0.2 289,661 - Psest_0273 0.12 +1.9 289,664 + Psest_0273 0.12 -0.7 289,664 + Psest_0273 0.12 +0.5 289,664 + Psest_0273 0.12 +0.8 289,665 - Psest_0273 0.12 -1.8 289,665 - Psest_0273 0.12 +0.9 289,665 - Psest_0273 0.12 -2.3 289,665 - Psest_0273 0.12 -2.3 289,665 - Psest_0273 0.12 -0.2 289,665 - Psest_0273 0.12 +1.4 289,665 - Psest_0273 0.12 -0.7 289,682 + Psest_0273 0.13 -0.6 289,683 - Psest_0273 0.13 -0.6 289,700 + Psest_0273 0.15 +0.2 289,701 - Psest_0273 0.15 -1.5 289,761 - Psest_0273 0.19 -1.1 289,811 + Psest_0273 0.22 +0.7 289,812 - Psest_0273 0.22 +1.8 289,841 + Psest_0273 0.24 -0.7 289,841 + Psest_0273 0.24 +0.3 289,856 + Psest_0273 0.25 -0.6 289,856 + Psest_0273 0.25 -1.2 289,856 + Psest_0273 0.25 -0.1 290,290 + Psest_0273 0.56 -0.4 290,342 - Psest_0273 0.60 -1.7 290,342 - Psest_0273 0.60 +0.2
Or see this region's nucleotide sequence