Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2737

Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2735 and Psest_2736 are separated by 179 nucleotidesPsest_2736 and Psest_2737 are separated by 141 nucleotidesPsest_2737 and Psest_2738 are separated by 108 nucleotides Psest_2735: Psest_2735 - hypothetical protein, at 2,925,977 to 2,926,651 _2735 Psest_2736: Psest_2736 - Transposase and inactivated derivatives, at 2,926,831 to 2,927,361 _2736 Psest_2737: Psest_2737 - Restriction endonuclease, at 2,927,503 to 2,928,399 _2737 Psest_2738: Psest_2738 - hypothetical protein, at 2,928,508 to 2,929,200 _2738 Position (kb) 2927 2928 2929Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2926.581 kb on + strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.646 kb on - strandat 2926.870 kb on + strandat 2926.870 kb on + strandat 2927.109 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.313 kb on + strandat 2927.393 kb on - strandat 2927.713 kb on + strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.735 kb on + strand, within Psest_2737at 2927.953 kb on + strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2928.002 kb on + strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.024 kb on + strand, within Psest_2737at 2928.024 kb on + strand, within Psest_2737at 2928.337 kb on - strandat 2928.409 kb on + strandat 2928.409 kb on + strandat 2928.410 kb on - strandat 2928.455 kb on + strandat 2928.458 kb on + strandat 2928.458 kb on + strandat 2928.459 kb on - strandat 2928.459 kb on - strandat 2928.459 kb on - strandat 2928.526 kb on - strandat 2928.541 kb on + strandat 2928.541 kb on + strandat 2928.541 kb on + strandat 2928.541 kb on + strandat 2928.541 kb on + strandat 2928.541 kb on + strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.542 kb on - strandat 2928.544 kb on + strandat 2928.727 kb on + strand, within Psest_2738at 2928.727 kb on + strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.728 kb on - strand, within Psest_2738at 2928.770 kb on - strand, within Psest_2738at 2928.792 kb on + strand, within Psest_2738at 2928.792 kb on + strand, within Psest_2738at 2928.793 kb on - strand, within Psest_2738at 2928.795 kb on + strand, within Psest_2738at 2928.811 kb on + strand, within Psest_2738at 2928.835 kb on - strand, within Psest_2738at 2928.880 kb on + strand, within Psest_2738at 2929.065 kb on - strand, within Psest_2738at 2929.105 kb on + strand, within Psest_2738at 2929.105 kb on + strand, within Psest_2738at 2929.122 kb on + strand, within Psest_2738at 2929.123 kb on - strand, within Psest_2738at 2929.175 kb on + strandat 2929.175 kb on + strandat 2929.195 kb on - strandat 2929.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4
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2,926,581 + Psest_2735 0.89 +2.4
2,926,582 - Psest_2735 0.90 +0.7
2,926,582 - Psest_2735 0.90 -0.6
2,926,646 - -1.2
2,926,870 + -1.6
2,926,870 + -1.1
2,927,109 - Psest_2736 0.52 -0.4
2,927,213 - Psest_2736 0.72 -0.1
2,927,213 - Psest_2736 0.72 -1.3
2,927,213 - Psest_2736 0.72 -0.2
2,927,313 + -0.3
2,927,393 - +1.4
2,927,713 + Psest_2737 0.23 +0.7
2,927,714 - Psest_2737 0.24 +3.3
2,927,714 - Psest_2737 0.24 -0.6
2,927,714 - Psest_2737 0.24 -0.7
2,927,714 - Psest_2737 0.24 -0.0
2,927,735 + Psest_2737 0.26 -1.0
2,927,953 + Psest_2737 0.50 +0.0
2,927,954 - Psest_2737 0.50 +0.2
2,927,954 - Psest_2737 0.50 +1.3
2,927,954 - Psest_2737 0.50 -0.4
2,927,954 - Psest_2737 0.50 -1.9
2,927,957 + Psest_2737 0.51 -1.0
2,927,957 + Psest_2737 0.51 -0.9
2,927,957 + Psest_2737 0.51 +2.2
2,927,958 - Psest_2737 0.51 -1.2
2,927,958 - Psest_2737 0.51 +0.5
2,927,958 - Psest_2737 0.51 -0.6
2,927,958 - Psest_2737 0.51 -0.8
2,927,958 - Psest_2737 0.51 -1.2
2,928,002 + Psest_2737 0.56 -0.5
2,928,003 - Psest_2737 0.56 -0.0
2,928,003 - Psest_2737 0.56 -0.3
2,928,003 - Psest_2737 0.56 -1.6
2,928,024 + Psest_2737 0.58 -0.0
2,928,024 + Psest_2737 0.58 -1.8
2,928,337 - -0.6
2,928,409 + -0.1
2,928,409 + -0.7
2,928,410 - -1.0
2,928,455 + +2.2
2,928,458 + -0.0
2,928,458 + +1.0
2,928,459 - +0.1
2,928,459 - +0.4
2,928,459 - -1.3
2,928,526 - +0.3
2,928,541 + -0.8
2,928,541 + +1.4
2,928,541 + +0.1
2,928,541 + +0.1
2,928,541 + +0.1
2,928,541 + -2.1
2,928,542 - +0.3
2,928,542 - +0.2
2,928,542 - -0.0
2,928,542 - -0.4
2,928,542 - +1.6
2,928,542 - +0.5
2,928,542 - +0.1
2,928,542 - +1.6
2,928,542 - +0.3
2,928,542 - +0.2
2,928,542 - -0.3
2,928,542 - +1.0
2,928,544 + -1.2
2,928,727 + Psest_2738 0.32 +1.1
2,928,727 + Psest_2738 0.32 +0.9
2,928,728 - Psest_2738 0.32 +0.1
2,928,728 - Psest_2738 0.32 +0.5
2,928,728 - Psest_2738 0.32 +0.2
2,928,728 - Psest_2738 0.32 -1.2
2,928,728 - Psest_2738 0.32 +0.8
2,928,728 - Psest_2738 0.32 +1.1
2,928,728 - Psest_2738 0.32 +1.8
2,928,728 - Psest_2738 0.32 +0.1
2,928,770 - Psest_2738 0.38 -0.1
2,928,792 + Psest_2738 0.41 +0.1
2,928,792 + Psest_2738 0.41 +0.2
2,928,793 - Psest_2738 0.41 -1.2
2,928,795 + Psest_2738 0.41 +3.8
2,928,811 + Psest_2738 0.44 +0.3
2,928,835 - Psest_2738 0.47 -0.6
2,928,880 + Psest_2738 0.54 -0.2
2,929,065 - Psest_2738 0.80 +0.7
2,929,105 + Psest_2738 0.86 -0.7
2,929,105 + Psest_2738 0.86 -2.2
2,929,122 + Psest_2738 0.89 +3.2
2,929,123 - Psest_2738 0.89 -2.0
2,929,175 + -0.1
2,929,175 + +0.4
2,929,195 - +1.0
2,929,199 - +0.1

Or see this region's nucleotide sequence