Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2637

Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2636 and Psest_2637 are separated by 112 nucleotidesPsest_2637 and Psest_2638 are separated by 18 nucleotides Psest_2636: Psest_2636 - tryptophan synthase, beta subunit, at 2,819,841 to 2,821,049 _2636 Psest_2637: Psest_2637 - putative methyltransferase, YaeB/AF_0241 family, at 2,821,162 to 2,821,869 _2637 Psest_2638: Psest_2638 - Protein related to penicillin acylase, at 2,821,888 to 2,824,425 _2638 Position (kb) 2821 2822Strain fitness (log2 ratio) -2 -1 0 1 2at 2820.380 kb on + strand, within Psest_2636at 2820.397 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.418 kb on - strand, within Psest_2636at 2820.424 kb on - strand, within Psest_2636at 2820.724 kb on - strand, within Psest_2636at 2820.724 kb on - strand, within Psest_2636at 2820.724 kb on - strand, within Psest_2636at 2820.813 kb on + strand, within Psest_2636at 2820.814 kb on - strand, within Psest_2636at 2820.814 kb on - strand, within Psest_2636at 2820.840 kb on + strand, within Psest_2636at 2820.840 kb on + strand, within Psest_2636at 2820.841 kb on - strand, within Psest_2636at 2820.841 kb on - strand, within Psest_2636at 2820.841 kb on - strand, within Psest_2636at 2820.980 kb on + strandat 2820.994 kb on + strandat 2820.994 kb on + strandat 2820.994 kb on + strandat 2820.994 kb on + strandat 2820.995 kb on - strandat 2820.995 kb on - strandat 2821.023 kb on + strandat 2821.047 kb on + strandat 2821.558 kb on + strand, within Psest_2637at 2821.559 kb on - strand, within Psest_2637at 2821.970 kb on + strandat 2821.970 kb on + strandat 2821.970 kb on + strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2821.971 kb on - strandat 2822.044 kb on - strandat 2822.044 kb on - strandat 2822.135 kb on + strandat 2822.155 kb on - strand, within Psest_2638at 2822.195 kb on + strand, within Psest_2638at 2822.195 kb on + strand, within Psest_2638at 2822.239 kb on - strand, within Psest_2638at 2822.398 kb on - strand, within Psest_2638at 2822.460 kb on - strand, within Psest_2638at 2822.516 kb on - strand, within Psest_2638at 2822.564 kb on + strand, within Psest_2638at 2822.564 kb on + strand, within Psest_2638at 2822.565 kb on - strand, within Psest_2638at 2822.816 kb on + strand, within Psest_2638

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4
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2,820,380 + Psest_2636 0.45 +0.4
2,820,397 - Psest_2636 0.46 -1.4
2,820,418 - Psest_2636 0.48 +0.2
2,820,418 - Psest_2636 0.48 +0.7
2,820,418 - Psest_2636 0.48 -1.6
2,820,418 - Psest_2636 0.48 -0.7
2,820,418 - Psest_2636 0.48 -0.2
2,820,418 - Psest_2636 0.48 +1.0
2,820,418 - Psest_2636 0.48 -1.5
2,820,424 - Psest_2636 0.48 -0.9
2,820,724 - Psest_2636 0.73 +1.2
2,820,724 - Psest_2636 0.73 +1.0
2,820,724 - Psest_2636 0.73 +2.1
2,820,813 + Psest_2636 0.80 +2.0
2,820,814 - Psest_2636 0.80 +0.6
2,820,814 - Psest_2636 0.80 +1.1
2,820,840 + Psest_2636 0.83 -0.0
2,820,840 + Psest_2636 0.83 +0.5
2,820,841 - Psest_2636 0.83 +0.1
2,820,841 - Psest_2636 0.83 +1.0
2,820,841 - Psest_2636 0.83 -0.0
2,820,980 + -1.6
2,820,994 + -0.1
2,820,994 + +0.2
2,820,994 + +1.3
2,820,994 + +0.4
2,820,995 - -0.4
2,820,995 - +2.4
2,821,023 + -1.9
2,821,047 + +0.2
2,821,558 + Psest_2637 0.56 -1.7
2,821,559 - Psest_2637 0.56 -1.6
2,821,970 + +1.0
2,821,970 + -0.4
2,821,970 + +0.0
2,821,971 - +0.8
2,821,971 - +1.3
2,821,971 - -0.3
2,821,971 - +1.0
2,821,971 - +0.4
2,821,971 - +0.1
2,821,971 - +0.3
2,821,971 - +0.5
2,822,044 - +0.2
2,822,044 - -0.6
2,822,135 + -0.0
2,822,155 - Psest_2638 0.11 +0.1
2,822,195 + Psest_2638 0.12 -0.1
2,822,195 + Psest_2638 0.12 -0.2
2,822,239 - Psest_2638 0.14 -2.5
2,822,398 - Psest_2638 0.20 +0.8
2,822,460 - Psest_2638 0.23 +0.5
2,822,516 - Psest_2638 0.25 -0.2
2,822,564 + Psest_2638 0.27 +0.3
2,822,564 + Psest_2638 0.27 -0.2
2,822,565 - Psest_2638 0.27 +0.4
2,822,816 + Psest_2638 0.37 +0.5

Or see this region's nucleotide sequence