Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2303

Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2302 and Psest_2303 overlap by 4 nucleotidesPsest_2303 and Psest_2304 are separated by 140 nucleotidesPsest_2304 and Psest_2305 are separated by 6 nucleotides Psest_2302: Psest_2302 - cysteinyl-tRNA synthetase, at 2,452,059 to 2,453,447 _2302 Psest_2303: Psest_2303 - glutaminyl-tRNA synthetase, at 2,453,444 to 2,455,174 _2303 Psest_2304: Psest_2304 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 2,455,315 to 2,455,809 _2304 Psest_2305: Psest_2305 - UDP-2,3-diacylglucosamine hydrolase, at 2,455,816 to 2,456,538 _2305 Position (kb) 2453 2454 2455 2456Strain fitness (log2 ratio) -2 -1 0 1at 2455.402 kb on + strand, within Psest_2304

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4
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2,455,402 + Psest_2304 0.18 -2.7

Or see this region's nucleotide sequence