Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0556 and Psest_0557 are separated by 368 nucleotides Psest_0557 and Psest_0558 are separated by 116 nucleotides Psest_0558 and Psest_0559 overlap by 4 nucleotides Psest_0559 and Psest_0560 are separated by 1 nucleotides
Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724
_0556
Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 611,093 to 612,793
_0557
Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215
_0558
Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775
_0559
Psest_0560: Psest_0560 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 613,777 to 614,079
_0560
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 610.429 kb on + strand, within Psest_0556 at 610.430 kb on - strand, within Psest_0556 at 610.573 kb on + strand, within Psest_0556 at 610.573 kb on + strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.574 kb on - strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.579 kb on + strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.580 kb on - strand, within Psest_0556 at 610.606 kb on + strand, within Psest_0556 at 610.869 kb on - strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.903 kb on - strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.906 kb on + strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 610.907 kb on - strand at 611.106 kb on + strand at 611.106 kb on + strand at 611.107 kb on - strand at 611.175 kb on + strand at 611.175 kb on + strand at 611.175 kb on + strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.176 kb on - strand at 611.209 kb on - strand at 611.255 kb on + strand at 611.329 kb on + strand, within Psest_0557 at 611.329 kb on + strand, within Psest_0557 at 611.330 kb on - strand, within Psest_0557 at 611.330 kb on - strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.577 kb on + strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.578 kb on - strand, within Psest_0557 at 611.589 kb on + strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557 at 611.590 kb on - strand, within Psest_0557 at 611.985 kb on + strand, within Psest_0557 at 611.986 kb on - strand, within Psest_0557 at 611.986 kb on - strand, within Psest_0557 at 611.986 kb on - strand, within Psest_0557 at 611.986 kb on - strand, within Psest_0557 at 612.681 kb on + strand at 612.681 kb on + strand at 612.681 kb on + strand at 612.681 kb on + strand at 612.681 kb on + strand at 612.681 kb on + strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.682 kb on - strand at 612.771 kb on + strand at 612.772 kb on - strand at 613.097 kb on + strand, within Psest_0558 at 613.331 kb on + strand, within Psest_0559 at 613.331 kb on + strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.463 kb on - strand, within Psest_0559 at 613.526 kb on - strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 610,429 + Psest_0556 0.59 -0.9 610,430 - Psest_0556 0.60 +0.1 610,573 + Psest_0556 0.79 +0.3 610,573 + Psest_0556 0.79 -0.8 610,574 - Psest_0556 0.79 -0.2 610,574 - Psest_0556 0.79 -0.6 610,574 - Psest_0556 0.79 +0.3 610,574 - Psest_0556 0.79 +3.1 610,574 - Psest_0556 0.79 -1.1 610,579 + Psest_0556 0.80 +0.3 610,579 + Psest_0556 0.80 +0.8 610,579 + Psest_0556 0.80 -1.3 610,579 + Psest_0556 0.80 -1.7 610,579 + Psest_0556 0.80 -0.9 610,579 + Psest_0556 0.80 -1.7 610,579 + Psest_0556 0.80 +0.2 610,579 + Psest_0556 0.80 -2.0 610,579 + Psest_0556 0.80 +1.7 610,579 + Psest_0556 0.80 -0.6 610,579 + Psest_0556 0.80 +1.4 610,580 - Psest_0556 0.80 +1.0 610,580 - Psest_0556 0.80 -0.2 610,580 - Psest_0556 0.80 -1.3 610,580 - Psest_0556 0.80 -1.2 610,580 - Psest_0556 0.80 +1.6 610,580 - Psest_0556 0.80 -0.1 610,580 - Psest_0556 0.80 +1.9 610,606 + Psest_0556 0.84 -1.0 610,869 - +0.5 610,902 + -0.9 610,902 + -0.1 610,902 + -3.2 610,902 + -0.1 610,902 + +0.9 610,903 - +1.5 610,903 - +0.3 610,903 - +0.5 610,903 - -1.3 610,903 - +0.1 610,906 + +0.2 610,906 + -1.3 610,906 + +0.6 610,906 + +1.4 610,906 + -1.4 610,906 + -1.7 610,906 + -1.9 610,906 + -1.8 610,906 + +0.7 610,907 - +5.7 610,907 - +0.7 610,907 - +1.7 610,907 - +0.9 610,907 - +1.7 610,907 - -0.0 611,106 + -2.7 611,106 + +1.4 611,107 - +2.8 611,175 + -1.1 611,175 + +0.8 611,175 + -2.1 611,176 - -1.4 611,176 - +0.4 611,176 - -0.3 611,176 - -0.3 611,176 - -1.2 611,176 - -0.2 611,209 - +0.5 611,255 + -0.2 611,329 + Psest_0557 0.14 -0.7 611,329 + Psest_0557 0.14 +0.8 611,330 - Psest_0557 0.14 -1.3 611,330 - Psest_0557 0.14 +0.3 611,577 + Psest_0557 0.28 +0.2 611,577 + Psest_0557 0.28 -1.4 611,577 + Psest_0557 0.28 +0.3 611,577 + Psest_0557 0.28 +1.1 611,577 + Psest_0557 0.28 -0.4 611,577 + Psest_0557 0.28 +0.1 611,577 + Psest_0557 0.28 +0.5 611,578 - Psest_0557 0.29 -2.8 611,578 - Psest_0557 0.29 +0.4 611,578 - Psest_0557 0.29 -1.8 611,578 - Psest_0557 0.29 -0.3 611,578 - Psest_0557 0.29 -2.7 611,578 - Psest_0557 0.29 -1.6 611,578 - Psest_0557 0.29 +0.3 611,578 - Psest_0557 0.29 +0.4 611,578 - Psest_0557 0.29 -2.2 611,589 + Psest_0557 0.29 -0.3 611,590 - Psest_0557 0.29 -2.6 611,590 - Psest_0557 0.29 -0.3 611,590 - Psest_0557 0.29 -0.9 611,985 + Psest_0557 0.52 -0.1 611,986 - Psest_0557 0.52 +1.3 611,986 - Psest_0557 0.52 -1.0 611,986 - Psest_0557 0.52 -2.3 611,986 - Psest_0557 0.52 -1.6 612,681 + -0.3 612,681 + +0.7 612,681 + +2.6 612,681 + -0.9 612,681 + +2.1 612,681 + -1.2 612,682 - -0.3 612,682 - -0.8 612,682 - +0.4 612,682 - -1.2 612,682 - +0.8 612,682 - +1.5 612,682 - +1.8 612,682 - -1.4 612,682 - -0.4 612,682 - +0.1 612,771 + +2.3 612,772 - +2.4 613,097 + Psest_0558 0.61 -3.6 613,331 + Psest_0559 0.21 +3.2 613,331 + Psest_0559 0.21 -0.4 613,332 - Psest_0559 0.21 -0.6 613,332 - Psest_0559 0.21 +3.7 613,462 + Psest_0559 0.44 +1.2 613,462 + Psest_0559 0.44 -1.9 613,463 - Psest_0559 0.45 +0.7 613,526 - Psest_0559 0.56 +0.7 613,669 + Psest_0559 0.81 -1.9 613,669 + Psest_0559 0.81 -1.8 613,669 + Psest_0559 0.81 +1.8 613,669 + Psest_0559 0.81 -1.2 613,669 + Psest_0559 0.81 +0.1 613,669 + Psest_0559 0.81 +0.3 613,670 - Psest_0559 0.81 -0.6 613,670 - Psest_0559 0.81 -3.1 613,670 - Psest_0559 0.81 -3.1 613,670 - Psest_0559 0.81 -0.8 613,670 - Psest_0559 0.81 -1.9 613,670 - Psest_0559 0.81 +0.7 613,670 - Psest_0559 0.81 -1.2 613,670 - Psest_0559 0.81 +0.7 613,673 + Psest_0559 0.82 +0.8 613,673 + Psest_0559 0.82 -1.3 613,673 + Psest_0559 0.82 -0.3 613,674 - Psest_0559 0.82 +2.1 613,674 - Psest_0559 0.82 -1.4 613,674 - Psest_0559 0.82 +0.3 613,674 - Psest_0559 0.82 -2.3 613,674 - Psest_0559 0.82 -0.1 613,713 + Psest_0559 0.89 -0.9 613,713 + Psest_0559 0.89 -0.9 613,713 + Psest_0559 0.89 +1.1 613,713 + Psest_0559 0.89 +1.4 613,713 + Psest_0559 0.89 +0.8 613,713 + Psest_0559 0.89 -1.2 613,714 - Psest_0559 0.89 +0.1 613,714 - Psest_0559 0.89 +2.5 613,714 - Psest_0559 0.89 +1.2 613,714 - Psest_0559 0.89 -0.4 613,714 - Psest_0559 0.89 +0.4 613,714 - Psest_0559 0.89 -1.5 613,714 - Psest_0559 0.89 -0.5 613,714 - Psest_0559 0.89 +0.9 613,759 + -1.1
Or see this region's nucleotide sequence