Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4334 and Psest_4335 are separated by 21 nucleotides Psest_4335 and Psest_4336 are separated by 83 nucleotides Psest_4336 and Psest_4337 are separated by 69 nucleotides
Psest_4334: Psest_4334 - protoheme IX farnesyltransferase, at 4,533,098 to 4,533,997
_4334
Psest_4335: Psest_4335 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 4,534,019 to 4,534,654
_4335
Psest_4336: Psest_4336 - Uncharacterized iron-regulated membrane protein, at 4,534,738 to 4,535,925
_4336
Psest_4337: Psest_4337 - TonB-dependent siderophore receptor, at 4,535,995 to 4,538,487
_4337
Position (kb) 4534
4535
4536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4533.740 kb on + strand, within Psest_4334 at 4533.740 kb on + strand, within Psest_4334 at 4533.740 kb on + strand, within Psest_4334 at 4533.741 kb on - strand, within Psest_4334 at 4533.765 kb on - strand, within Psest_4334 at 4533.765 kb on - strand at 4533.827 kb on + strand, within Psest_4334 at 4533.828 kb on - strand, within Psest_4334 at 4533.828 kb on - strand, within Psest_4334 at 4533.828 kb on - strand, within Psest_4334 at 4533.867 kb on - strand, within Psest_4334 at 4533.939 kb on - strand at 4533.939 kb on - strand at 4533.977 kb on + strand at 4533.978 kb on - strand at 4533.978 kb on - strand at 4534.008 kb on + strand at 4534.213 kb on - strand, within Psest_4335 at 4534.407 kb on - strand, within Psest_4335 at 4534.407 kb on - strand, within Psest_4335 at 4534.415 kb on + strand, within Psest_4335 at 4534.524 kb on - strand, within Psest_4335 at 4534.524 kb on - strand, within Psest_4335 at 4534.660 kb on - strand at 4534.820 kb on - strand at 4535.048 kb on + strand, within Psest_4336 at 4535.048 kb on + strand, within Psest_4336 at 4535.048 kb on + strand, within Psest_4336 at 4535.048 kb on + strand, within Psest_4336 at 4535.049 kb on - strand, within Psest_4336 at 4535.049 kb on - strand, within Psest_4336 at 4535.057 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.069 kb on + strand, within Psest_4336 at 4535.070 kb on - strand, within Psest_4336 at 4535.070 kb on - strand, within Psest_4336 at 4535.072 kb on + strand, within Psest_4336 at 4535.072 kb on + strand, within Psest_4336 at 4535.072 kb on + strand, within Psest_4336 at 4535.073 kb on - strand, within Psest_4336 at 4535.073 kb on - strand, within Psest_4336 at 4535.073 kb on - strand, within Psest_4336 at 4535.073 kb on - strand, within Psest_4336 at 4535.132 kb on + strand, within Psest_4336 at 4535.150 kb on + strand, within Psest_4336 at 4535.305 kb on + strand, within Psest_4336 at 4535.458 kb on - strand, within Psest_4336 at 4535.501 kb on + strand, within Psest_4336 at 4535.502 kb on - strand, within Psest_4336 at 4535.601 kb on - strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.705 kb on + strand, within Psest_4336 at 4535.792 kb on + strand, within Psest_4336 at 4535.793 kb on - strand, within Psest_4336 at 4535.894 kb on + strand at 4535.894 kb on + strand at 4535.894 kb on + strand at 4535.894 kb on + strand at 4535.894 kb on + strand at 4535.895 kb on - strand at 4535.895 kb on - strand at 4535.895 kb on - strand at 4535.939 kb on + strand at 4535.940 kb on - strand at 4536.005 kb on + strand at 4536.005 kb on + strand at 4536.041 kb on + strand at 4536.042 kb on - strand at 4536.042 kb on - strand at 4536.042 kb on - strand at 4536.042 kb on - strand at 4536.044 kb on + strand at 4536.044 kb on + strand at 4536.045 kb on - strand at 4536.045 kb on - strand at 4536.045 kb on - strand at 4536.077 kb on + strand at 4536.077 kb on + strand at 4536.077 kb on + strand at 4536.077 kb on + strand at 4536.077 kb on + strand at 4536.078 kb on - strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.167 kb on + strand at 4536.168 kb on - strand at 4536.168 kb on - strand at 4536.168 kb on - strand at 4536.168 kb on - strand at 4536.168 kb on - strand at 4536.177 kb on - strand at 4536.227 kb on + strand at 4536.281 kb on + strand, within Psest_4337 at 4536.282 kb on - strand, within Psest_4337 at 4536.282 kb on - strand, within Psest_4337 at 4536.282 kb on - strand, within Psest_4337 at 4536.282 kb on - strand, within Psest_4337 at 4536.327 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.389 kb on + strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.390 kb on - strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.395 kb on + strand, within Psest_4337 at 4536.396 kb on - strand, within Psest_4337 at 4536.396 kb on - strand, within Psest_4337 at 4536.396 kb on - strand, within Psest_4337 at 4536.482 kb on + strand, within Psest_4337 at 4536.483 kb on - strand, within Psest_4337 at 4536.536 kb on + strand, within Psest_4337 at 4536.536 kb on + strand, within Psest_4337 at 4536.536 kb on + strand, within Psest_4337 at 4536.548 kb on + strand, within Psest_4337 at 4536.548 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.575 kb on + strand, within Psest_4337 at 4536.576 kb on - strand, within Psest_4337 at 4536.593 kb on + strand, within Psest_4337 at 4536.594 kb on - strand, within Psest_4337 at 4536.594 kb on - strand, within Psest_4337 at 4536.625 kb on - strand, within Psest_4337 at 4536.625 kb on - strand, within Psest_4337 at 4536.625 kb on - strand, within Psest_4337 at 4536.625 kb on - strand, within Psest_4337 at 4536.656 kb on + strand, within Psest_4337 at 4536.656 kb on + strand, within Psest_4337 at 4536.657 kb on - strand, within Psest_4337 at 4536.657 kb on - strand, within Psest_4337 at 4536.692 kb on + strand, within Psest_4337 at 4536.729 kb on - strand, within Psest_4337 at 4536.805 kb on - strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.887 kb on + strand, within Psest_4337 at 4536.888 kb on - strand, within Psest_4337
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 4,533,740 + Psest_4334 0.71 +1.9 4,533,740 + Psest_4334 0.71 -1.6 4,533,740 + Psest_4334 0.71 -0.4 4,533,741 - Psest_4334 0.71 -0.2 4,533,765 - Psest_4334 0.74 -0.2 4,533,765 - -0.0 4,533,827 + Psest_4334 0.81 -2.1 4,533,828 - Psest_4334 0.81 -0.4 4,533,828 - Psest_4334 0.81 -1.4 4,533,828 - Psest_4334 0.81 -1.0 4,533,867 - Psest_4334 0.85 +1.6 4,533,939 - -0.6 4,533,939 - +1.8 4,533,977 + -1.0 4,533,978 - +1.0 4,533,978 - +0.2 4,534,008 + -1.5 4,534,213 - Psest_4335 0.31 -0.2 4,534,407 - Psest_4335 0.61 -2.3 4,534,407 - Psest_4335 0.61 -0.5 4,534,415 + Psest_4335 0.62 -1.2 4,534,524 - Psest_4335 0.79 +1.8 4,534,524 - Psest_4335 0.79 -2.0 4,534,660 - -0.8 4,534,820 - +0.7 4,535,048 + Psest_4336 0.26 +0.2 4,535,048 + Psest_4336 0.26 +0.0 4,535,048 + Psest_4336 0.26 -1.3 4,535,048 + Psest_4336 0.26 -0.8 4,535,049 - Psest_4336 0.26 +2.9 4,535,049 - Psest_4336 0.26 +1.4 4,535,057 + Psest_4336 0.27 -2.2 4,535,069 + Psest_4336 0.28 -0.8 4,535,069 + Psest_4336 0.28 -2.0 4,535,069 + Psest_4336 0.28 -2.5 4,535,069 + Psest_4336 0.28 +2.1 4,535,069 + Psest_4336 0.28 -1.7 4,535,069 + Psest_4336 0.28 +0.9 4,535,069 + Psest_4336 0.28 -1.6 4,535,069 + Psest_4336 0.28 +1.8 4,535,069 + Psest_4336 0.28 -1.2 4,535,070 - Psest_4336 0.28 +1.2 4,535,070 - Psest_4336 0.28 -0.2 4,535,072 + Psest_4336 0.28 +0.8 4,535,072 + Psest_4336 0.28 +0.6 4,535,072 + Psest_4336 0.28 -1.0 4,535,073 - Psest_4336 0.28 -2.0 4,535,073 - Psest_4336 0.28 -1.9 4,535,073 - Psest_4336 0.28 +1.2 4,535,073 - Psest_4336 0.28 -0.0 4,535,132 + Psest_4336 0.33 +0.7 4,535,150 + Psest_4336 0.35 -0.9 4,535,305 + Psest_4336 0.48 -0.6 4,535,458 - Psest_4336 0.61 -1.5 4,535,501 + Psest_4336 0.64 -1.7 4,535,502 - Psest_4336 0.64 -0.8 4,535,601 - Psest_4336 0.73 -0.9 4,535,705 + Psest_4336 0.81 -2.1 4,535,705 + Psest_4336 0.81 -0.9 4,535,705 + Psest_4336 0.81 -1.0 4,535,705 + Psest_4336 0.81 -2.1 4,535,705 + Psest_4336 0.81 -1.7 4,535,705 + Psest_4336 0.81 +1.3 4,535,705 + Psest_4336 0.81 -0.5 4,535,792 + Psest_4336 0.89 -0.6 4,535,793 - Psest_4336 0.89 -0.3 4,535,894 + +0.8 4,535,894 + -1.7 4,535,894 + +3.5 4,535,894 + -0.1 4,535,894 + +4.5 4,535,895 - +1.2 4,535,895 - +0.4 4,535,895 - -1.3 4,535,939 + -0.4 4,535,940 - +0.8 4,536,005 + -1.8 4,536,005 + -0.2 4,536,041 + -0.8 4,536,042 - -0.3 4,536,042 - +0.6 4,536,042 - +3.0 4,536,042 - -0.9 4,536,044 + +4.4 4,536,044 + -1.3 4,536,045 - +0.5 4,536,045 - -1.7 4,536,045 - -0.5 4,536,077 + -2.5 4,536,077 + -1.1 4,536,077 + -1.5 4,536,077 + +3.3 4,536,077 + +0.5 4,536,078 - -1.3 4,536,167 + +1.1 4,536,167 + +0.1 4,536,167 + -0.6 4,536,167 + -0.5 4,536,167 + +0.3 4,536,167 + +1.4 4,536,167 + +4.5 4,536,167 + -2.4 4,536,167 + +0.8 4,536,168 - -0.2 4,536,168 - +1.6 4,536,168 - -0.2 4,536,168 - -0.1 4,536,168 - +1.9 4,536,177 - +0.9 4,536,227 + -2.4 4,536,281 + Psest_4337 0.11 +0.4 4,536,282 - Psest_4337 0.12 -0.9 4,536,282 - Psest_4337 0.12 -1.4 4,536,282 - Psest_4337 0.12 +0.5 4,536,282 - Psest_4337 0.12 -1.0 4,536,327 + Psest_4337 0.13 -0.7 4,536,389 + Psest_4337 0.16 +2.8 4,536,389 + Psest_4337 0.16 +2.1 4,536,389 + Psest_4337 0.16 -0.1 4,536,389 + Psest_4337 0.16 +2.8 4,536,389 + Psest_4337 0.16 +0.3 4,536,389 + Psest_4337 0.16 +0.2 4,536,389 + Psest_4337 0.16 +0.3 4,536,389 + Psest_4337 0.16 -0.5 4,536,389 + Psest_4337 0.16 +0.3 4,536,389 + Psest_4337 0.16 +3.1 4,536,389 + Psest_4337 0.16 +0.8 4,536,389 + Psest_4337 0.16 -1.0 4,536,389 + Psest_4337 0.16 -2.2 4,536,389 + Psest_4337 0.16 +0.8 4,536,389 + Psest_4337 0.16 +0.7 4,536,389 + Psest_4337 0.16 -1.6 4,536,389 + Psest_4337 0.16 -1.5 4,536,389 + Psest_4337 0.16 +0.8 4,536,389 + Psest_4337 0.16 -0.1 4,536,389 + Psest_4337 0.16 +0.8 4,536,389 + Psest_4337 0.16 -0.3 4,536,389 + Psest_4337 0.16 -0.7 4,536,389 + Psest_4337 0.16 +1.2 4,536,389 + Psest_4337 0.16 +1.2 4,536,390 - Psest_4337 0.16 -1.2 4,536,390 - Psest_4337 0.16 -1.9 4,536,390 - Psest_4337 0.16 +0.4 4,536,390 - Psest_4337 0.16 -1.1 4,536,390 - Psest_4337 0.16 +1.0 4,536,390 - Psest_4337 0.16 -1.1 4,536,390 - Psest_4337 0.16 +0.3 4,536,390 - Psest_4337 0.16 +3.2 4,536,390 - Psest_4337 0.16 -0.8 4,536,390 - Psest_4337 0.16 -0.1 4,536,390 - Psest_4337 0.16 -1.4 4,536,390 - Psest_4337 0.16 -0.3 4,536,390 - Psest_4337 0.16 +1.2 4,536,395 + Psest_4337 0.16 -1.2 4,536,395 + Psest_4337 0.16 +0.2 4,536,395 + Psest_4337 0.16 +1.7 4,536,395 + Psest_4337 0.16 +1.1 4,536,395 + Psest_4337 0.16 -1.1 4,536,395 + Psest_4337 0.16 +2.5 4,536,395 + Psest_4337 0.16 -1.6 4,536,396 - Psest_4337 0.16 -0.5 4,536,396 - Psest_4337 0.16 +1.4 4,536,396 - Psest_4337 0.16 +0.5 4,536,482 + Psest_4337 0.20 -2.0 4,536,483 - Psest_4337 0.20 -0.7 4,536,536 + Psest_4337 0.22 +0.1 4,536,536 + Psest_4337 0.22 +0.6 4,536,536 + Psest_4337 0.22 +0.8 4,536,548 + Psest_4337 0.22 +2.6 4,536,548 + Psest_4337 0.22 -0.5 4,536,575 + Psest_4337 0.23 +0.6 4,536,575 + Psest_4337 0.23 -0.2 4,536,575 + Psest_4337 0.23 +0.8 4,536,575 + Psest_4337 0.23 +0.4 4,536,575 + Psest_4337 0.23 +0.4 4,536,575 + Psest_4337 0.23 +1.9 4,536,576 - Psest_4337 0.23 -0.7 4,536,593 + Psest_4337 0.24 -0.6 4,536,594 - Psest_4337 0.24 +0.4 4,536,594 - Psest_4337 0.24 -2.7 4,536,625 - Psest_4337 0.25 +0.0 4,536,625 - Psest_4337 0.25 -0.5 4,536,625 - Psest_4337 0.25 +0.7 4,536,625 - Psest_4337 0.25 +0.9 4,536,656 + Psest_4337 0.27 -1.3 4,536,656 + Psest_4337 0.27 -0.9 4,536,657 - Psest_4337 0.27 -2.4 4,536,657 - Psest_4337 0.27 +0.2 4,536,692 + Psest_4337 0.28 +0.2 4,536,729 - Psest_4337 0.29 +0.9 4,536,805 - Psest_4337 0.32 -1.1 4,536,887 + Psest_4337 0.36 -2.0 4,536,887 + Psest_4337 0.36 +3.8 4,536,887 + Psest_4337 0.36 -2.9 4,536,887 + Psest_4337 0.36 +4.3 4,536,887 + Psest_4337 0.36 +2.5 4,536,887 + Psest_4337 0.36 -0.2 4,536,888 - Psest_4337 0.36 +3.1
Or see this region's nucleotide sequence