Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0300 and Psest_0301 are separated by 60 nucleotides Psest_0301 and Psest_0302 are separated by 11 nucleotides
Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848
_0300
Psest_0301: Psest_0301 - Methylase of chemotaxis methyl-accepting proteins, at 314,909 to 315,775
_0301
Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013
_0302
Position (kb) 314
315
316 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 313.961 kb on + strand, within Psest_0300 at 313.961 kb on + strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 313.962 kb on - strand, within Psest_0300 at 314.190 kb on + strand, within Psest_0300 at 314.200 kb on + strand, within Psest_0300 at 314.201 kb on - strand, within Psest_0300 at 314.210 kb on - strand, within Psest_0300 at 314.336 kb on - strand, within Psest_0300 at 314.372 kb on - strand, within Psest_0300 at 314.557 kb on - strand, within Psest_0300 at 314.743 kb on + strand at 314.951 kb on - strand at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.093 kb on - strand, within Psest_0301 at 315.205 kb on - strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.215 kb on + strand, within Psest_0301 at 315.216 kb on - strand, within Psest_0301 at 315.219 kb on + strand, within Psest_0301 at 315.219 kb on + strand, within Psest_0301 at 315.220 kb on - strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.273 kb on + strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.274 kb on - strand, within Psest_0301 at 315.417 kb on - strand, within Psest_0301 at 315.465 kb on - strand, within Psest_0301 at 315.609 kb on - strand, within Psest_0301 at 315.609 kb on - strand, within Psest_0301 at 315.691 kb on - strand at 315.758 kb on - strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.805 kb on + strand at 315.806 kb on - strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.849 kb on + strand at 315.850 kb on - strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.925 kb on + strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 315.926 kb on - strand at 316.149 kb on - strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.444 kb on - strand at 316.444 kb on - strand at 316.444 kb on - strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.472 kb on + strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.473 kb on - strand at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.600 kb on + strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.601 kb on - strand, within Psest_0302 at 316.654 kb on + strand, within Psest_0302
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 313,961 + Psest_0300 0.57 -0.1 313,961 + Psest_0300 0.57 -0.5 313,962 - Psest_0300 0.57 +0.9 313,962 - Psest_0300 0.57 +2.9 313,962 - Psest_0300 0.57 +0.8 313,962 - Psest_0300 0.57 -0.2 314,190 + Psest_0300 0.68 +2.0 314,200 + Psest_0300 0.68 +2.1 314,201 - Psest_0300 0.68 -0.8 314,210 - Psest_0300 0.69 -0.8 314,336 - Psest_0300 0.75 +0.1 314,372 - Psest_0300 0.77 -0.2 314,557 - Psest_0300 0.86 -0.2 314,743 + +3.0 314,951 - +2.8 315,093 - Psest_0301 0.21 +0.8 315,093 - Psest_0301 0.21 -1.3 315,093 - Psest_0301 0.21 +0.3 315,093 - Psest_0301 0.21 +2.8 315,093 - Psest_0301 0.21 +2.9 315,205 - Psest_0301 0.34 +1.7 315,215 + Psest_0301 0.35 -2.3 315,215 + Psest_0301 0.35 -1.6 315,215 + Psest_0301 0.35 +1.6 315,216 - Psest_0301 0.35 +1.3 315,219 + Psest_0301 0.36 +1.2 315,219 + Psest_0301 0.36 -1.8 315,220 - Psest_0301 0.36 +2.2 315,273 + Psest_0301 0.42 -0.4 315,273 + Psest_0301 0.42 -1.2 315,273 + Psest_0301 0.42 -2.5 315,273 + Psest_0301 0.42 +5.5 315,273 + Psest_0301 0.42 -0.1 315,273 + Psest_0301 0.42 +1.4 315,274 - Psest_0301 0.42 +2.0 315,274 - Psest_0301 0.42 -0.8 315,274 - Psest_0301 0.42 +1.5 315,417 - Psest_0301 0.59 +0.6 315,465 - Psest_0301 0.64 +1.1 315,609 - Psest_0301 0.81 +1.3 315,609 - Psest_0301 0.81 +1.2 315,691 - +1.3 315,758 - +1.4 315,805 + -1.3 315,805 + +2.2 315,805 + +2.5 315,805 + +0.9 315,805 + +1.6 315,805 + +3.0 315,805 + +1.7 315,805 + +2.4 315,805 + +1.4 315,805 + +0.6 315,806 - +4.5 315,849 + +3.0 315,849 + +1.9 315,849 + +0.9 315,849 + +1.3 315,849 + +1.7 315,850 - +0.3 315,925 + +3.2 315,925 + +2.0 315,925 + +3.3 315,925 + -1.4 315,925 + +3.1 315,926 - +2.5 315,926 - -2.4 315,926 - +0.2 315,926 - -0.6 315,926 - +1.2 315,926 - +1.1 315,926 - +4.0 315,926 - +0.4 315,926 - +0.6 315,926 - -0.1 315,926 - +0.3 315,926 - -0.1 315,926 - -0.0 315,926 - +1.9 315,926 - +0.9 316,149 - +2.3 316,363 + +0.7 316,363 + +1.9 316,363 + +2.7 316,363 + +2.7 316,364 - +0.6 316,364 - +1.8 316,364 - -0.6 316,444 - +1.1 316,444 - +3.1 316,444 - +3.2 316,472 + +0.2 316,472 + -0.1 316,472 + +1.4 316,472 + +2.0 316,472 + +0.7 316,472 + +2.0 316,473 - +0.6 316,473 - +1.9 316,473 - +0.7 316,473 - -0.1 316,473 - +1.5 316,600 + Psest_0302 0.11 +2.9 316,600 + Psest_0302 0.11 +1.5 316,600 + Psest_0302 0.11 +0.1 316,600 + Psest_0302 0.11 +1.9 316,600 + Psest_0302 0.11 +2.5 316,600 + Psest_0302 0.11 +1.5 316,600 + Psest_0302 0.11 +4.4 316,601 - Psest_0302 0.11 -0.8 316,601 - Psest_0302 0.11 +1.1 316,601 - Psest_0302 0.11 +0.4 316,601 - Psest_0302 0.11 -0.8 316,654 + Psest_0302 0.12 +2.3
Or see this region's nucleotide sequence