Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2744 and Psest_2745 are separated by 129 nucleotides Psest_2745 and Psest_2746 are separated by 22 nucleotides Psest_2746 and Psest_2747 are separated by 254 nucleotides
Psest_2744: Psest_2744 - Uncharacterized conserved protein, at 2,935,684 to 2,936,130
_2744
Psest_2745: Psest_2745 - Transcriptional regulator, at 2,936,260 to 2,936,943
_2745
Psest_2746: Psest_2746 - Protein of unknown function (DUF2855)., at 2,936,966 to 2,938,069
_2746
Psest_2747: Psest_2747 - Putative NADPH-quinone reductase (modulator of drug activity B), at 2,938,324 to 2,939,106
_2747
Position (kb)
2936
2937
2938
2939 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2936.076 kb on - strand, within Psest_2744 at 2936.076 kb on - strand, within Psest_2744 at 2936.174 kb on - strand at 2936.247 kb on + strand at 2936.289 kb on + strand at 2936.289 kb on + strand at 2936.290 kb on - strand at 2936.290 kb on - strand at 2936.480 kb on + strand, within Psest_2745 at 2936.678 kb on + strand, within Psest_2745 at 2936.678 kb on + strand, within Psest_2745 at 2936.711 kb on + strand, within Psest_2745 at 2936.711 kb on + strand, within Psest_2745 at 2936.711 kb on + strand, within Psest_2745 at 2936.711 kb on + strand, within Psest_2745 at 2936.712 kb on - strand, within Psest_2745 at 2936.712 kb on - strand, within Psest_2745 at 2936.712 kb on - strand, within Psest_2745 at 2936.712 kb on - strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.804 kb on + strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.805 kb on - strand, within Psest_2745 at 2936.824 kb on + strand, within Psest_2745 at 2936.825 kb on - strand, within Psest_2745 at 2936.945 kb on + strand at 2936.945 kb on + strand at 2936.946 kb on - strand at 2936.946 kb on - strand at 2936.946 kb on - strand at 2936.946 kb on - strand at 2937.071 kb on - strand at 2937.140 kb on + strand, within Psest_2746 at 2937.152 kb on + strand, within Psest_2746 at 2937.153 kb on - strand, within Psest_2746 at 2937.251 kb on + strand, within Psest_2746 at 2937.251 kb on + strand, within Psest_2746 at 2937.252 kb on - strand, within Psest_2746 at 2937.317 kb on + strand, within Psest_2746 at 2937.356 kb on + strand, within Psest_2746 at 2937.356 kb on + strand, within Psest_2746 at 2937.357 kb on - strand, within Psest_2746 at 2937.366 kb on - strand, within Psest_2746 at 2937.586 kb on + strand, within Psest_2746 at 2937.587 kb on - strand, within Psest_2746 at 2937.587 kb on - strand, within Psest_2746 at 2937.613 kb on - strand, within Psest_2746 at 2937.613 kb on - strand, within Psest_2746 at 2937.689 kb on + strand, within Psest_2746 at 2937.717 kb on + strand, within Psest_2746 at 2937.717 kb on + strand, within Psest_2746 at 2937.718 kb on - strand, within Psest_2746 at 2937.795 kb on - strand, within Psest_2746 at 2937.839 kb on + strand, within Psest_2746 at 2937.839 kb on + strand, within Psest_2746 at 2937.928 kb on + strand, within Psest_2746 at 2937.939 kb on + strand, within Psest_2746 at 2938.020 kb on + strand at 2938.020 kb on + strand at 2938.020 kb on + strand at 2938.030 kb on + strand at 2938.030 kb on + strand at 2938.092 kb on + strand at 2938.111 kb on - strand at 2938.139 kb on - strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.336 kb on + strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.337 kb on - strand at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.579 kb on + strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.580 kb on - strand, within Psest_2747 at 2938.629 kb on - strand, within Psest_2747 at 2938.740 kb on - strand, within Psest_2747 at 2938.740 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.758 kb on - strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.988 kb on + strand, within Psest_2747 at 2938.989 kb on - strand, within Psest_2747 at 2938.989 kb on - strand, within Psest_2747
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 2,936,076 - Psest_2744 0.88 +0.3 2,936,076 - Psest_2744 0.88 +1.1 2,936,174 - -0.8 2,936,247 + +1.2 2,936,289 + +0.3 2,936,289 + +1.5 2,936,290 - -2.1 2,936,290 - +0.2 2,936,480 + Psest_2745 0.32 +4.9 2,936,678 + Psest_2745 0.61 +1.2 2,936,678 + Psest_2745 0.61 +1.5 2,936,711 + Psest_2745 0.66 -0.9 2,936,711 + Psest_2745 0.66 -2.8 2,936,711 + Psest_2745 0.66 -0.9 2,936,711 + Psest_2745 0.66 -1.5 2,936,712 - Psest_2745 0.66 +1.0 2,936,712 - Psest_2745 0.66 -1.0 2,936,712 - Psest_2745 0.66 -0.8 2,936,712 - Psest_2745 0.66 -0.3 2,936,804 + Psest_2745 0.80 +1.5 2,936,804 + Psest_2745 0.80 +0.4 2,936,804 + Psest_2745 0.80 -1.5 2,936,804 + Psest_2745 0.80 -0.1 2,936,804 + Psest_2745 0.80 -0.9 2,936,804 + Psest_2745 0.80 +1.6 2,936,804 + Psest_2745 0.80 -0.6 2,936,804 + Psest_2745 0.80 -1.8 2,936,804 + Psest_2745 0.80 +0.6 2,936,804 + Psest_2745 0.80 +0.9 2,936,804 + Psest_2745 0.80 +0.1 2,936,804 + Psest_2745 0.80 -0.5 2,936,804 + Psest_2745 0.80 +1.3 2,936,804 + Psest_2745 0.80 -0.6 2,936,804 + Psest_2745 0.80 +2.2 2,936,804 + Psest_2745 0.80 -3.4 2,936,805 - Psest_2745 0.80 +1.5 2,936,805 - Psest_2745 0.80 +2.7 2,936,805 - Psest_2745 0.80 -1.3 2,936,805 - Psest_2745 0.80 -1.2 2,936,805 - Psest_2745 0.80 +0.3 2,936,805 - Psest_2745 0.80 +1.7 2,936,805 - Psest_2745 0.80 +0.7 2,936,805 - Psest_2745 0.80 +0.7 2,936,805 - Psest_2745 0.80 +0.1 2,936,805 - Psest_2745 0.80 +0.6 2,936,805 - Psest_2745 0.80 -2.4 2,936,805 - Psest_2745 0.80 +1.2 2,936,805 - Psest_2745 0.80 -1.1 2,936,805 - Psest_2745 0.80 +1.1 2,936,805 - Psest_2745 0.80 -0.3 2,936,805 - Psest_2745 0.80 -0.3 2,936,805 - Psest_2745 0.80 -0.4 2,936,805 - Psest_2745 0.80 +0.9 2,936,824 + Psest_2745 0.82 -0.5 2,936,825 - Psest_2745 0.83 +0.5 2,936,945 + +0.3 2,936,945 + -0.6 2,936,946 - +0.9 2,936,946 - +0.4 2,936,946 - -1.6 2,936,946 - +0.1 2,937,071 - -0.9 2,937,140 + Psest_2746 0.16 +2.0 2,937,152 + Psest_2746 0.17 -0.4 2,937,153 - Psest_2746 0.17 -0.6 2,937,251 + Psest_2746 0.26 -2.6 2,937,251 + Psest_2746 0.26 -0.2 2,937,252 - Psest_2746 0.26 -0.8 2,937,317 + Psest_2746 0.32 -2.7 2,937,356 + Psest_2746 0.35 -1.5 2,937,356 + Psest_2746 0.35 +0.3 2,937,357 - Psest_2746 0.35 +1.2 2,937,366 - Psest_2746 0.36 +1.3 2,937,586 + Psest_2746 0.56 -0.6 2,937,587 - Psest_2746 0.56 -0.2 2,937,587 - Psest_2746 0.56 +0.6 2,937,613 - Psest_2746 0.59 -1.5 2,937,613 - Psest_2746 0.59 -0.3 2,937,689 + Psest_2746 0.65 -2.1 2,937,717 + Psest_2746 0.68 +1.4 2,937,717 + Psest_2746 0.68 -0.0 2,937,718 - Psest_2746 0.68 +0.3 2,937,795 - Psest_2746 0.75 +0.7 2,937,839 + Psest_2746 0.79 -0.1 2,937,839 + Psest_2746 0.79 -1.0 2,937,928 + Psest_2746 0.87 -3.2 2,937,939 + Psest_2746 0.88 -0.6 2,938,020 + +0.5 2,938,020 + +0.1 2,938,020 + +2.2 2,938,030 + -1.3 2,938,030 + -1.6 2,938,092 + -0.2 2,938,111 - -0.2 2,938,139 - -1.5 2,938,336 + -0.8 2,938,336 + -1.1 2,938,336 + +0.8 2,938,336 + +0.1 2,938,336 + +0.3 2,938,337 - +2.7 2,938,337 - -0.6 2,938,337 - -0.1 2,938,337 - -0.3 2,938,337 - -0.6 2,938,579 + Psest_2747 0.33 -0.7 2,938,579 + Psest_2747 0.33 -0.5 2,938,579 + Psest_2747 0.33 -1.3 2,938,579 + Psest_2747 0.33 +0.4 2,938,580 - Psest_2747 0.33 +2.7 2,938,580 - Psest_2747 0.33 -2.7 2,938,580 - Psest_2747 0.33 -0.3 2,938,580 - Psest_2747 0.33 +0.5 2,938,580 - Psest_2747 0.33 -0.3 2,938,629 - Psest_2747 0.39 +1.3 2,938,740 - Psest_2747 0.53 -2.4 2,938,740 - Psest_2747 0.53 -1.0 2,938,758 - Psest_2747 0.55 -0.1 2,938,758 - Psest_2747 0.55 +0.5 2,938,758 - Psest_2747 0.55 +1.4 2,938,758 - Psest_2747 0.55 -0.6 2,938,988 + Psest_2747 0.85 -2.2 2,938,988 + Psest_2747 0.85 -0.3 2,938,988 + Psest_2747 0.85 +1.7 2,938,988 + Psest_2747 0.85 -0.3 2,938,989 - Psest_2747 0.85 +0.9 2,938,989 - Psest_2747 0.85 +1.2
Or see this region's nucleotide sequence