Experiment: RCH2 grown on a colony of Pseudomonas migulae strain N1B4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2482 and Psest_2483 are separated by 229 nucleotides Psest_2483 and Psest_2484 are separated by 60 nucleotides
Psest_2482: Psest_2482 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,654,604 to 2,655,629
_2482
Psest_2483: Psest_2483 - Predicted redox protein, regulator of disulfide bond formation, at 2,655,859 to 2,656,293
_2483
Psest_2484: Psest_2484 - Molecular chaperone, HSP90 family, at 2,656,354 to 2,658,258
_2484
Position (kb)
2655
2656
2657 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2654.869 kb on + strand, within Psest_2482 at 2654.869 kb on + strand, within Psest_2482 at 2654.869 kb on + strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2655.104 kb on - strand, within Psest_2482 at 2655.104 kb on - strand, within Psest_2482 at 2655.362 kb on - strand, within Psest_2482 at 2655.362 kb on - strand, within Psest_2482 at 2655.362 kb on - strand, within Psest_2482 at 2655.385 kb on + strand, within Psest_2482 at 2655.526 kb on + strand, within Psest_2482 at 2655.526 kb on + strand, within Psest_2482 at 2655.526 kb on + strand, within Psest_2482 at 2655.526 kb on + strand, within Psest_2482 at 2655.526 kb on + strand, within Psest_2482 at 2655.545 kb on + strand at 2655.546 kb on - strand at 2655.576 kb on + strand at 2655.577 kb on - strand at 2655.625 kb on + strand at 2655.626 kb on - strand at 2655.626 kb on - strand at 2655.657 kb on + strand at 2655.714 kb on - strand at 2655.728 kb on - strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.777 kb on + strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.778 kb on - strand at 2655.780 kb on + strand at 2655.855 kb on + strand at 2655.855 kb on + strand at 2655.855 kb on + strand at 2655.855 kb on + strand at 2655.855 kb on + strand at 2655.856 kb on - strand at 2655.856 kb on - strand at 2655.977 kb on + strand, within Psest_2483 at 2655.977 kb on + strand, within Psest_2483 at 2655.978 kb on - strand, within Psest_2483 at 2655.978 kb on - strand, within Psest_2483 at 2656.034 kb on + strand, within Psest_2483 at 2656.035 kb on - strand, within Psest_2483 at 2656.035 kb on - strand, within Psest_2483 at 2656.035 kb on - strand, within Psest_2483 at 2656.290 kb on - strand at 2656.393 kb on + strand at 2656.393 kb on + strand at 2656.393 kb on + strand at 2656.394 kb on - strand at 2656.394 kb on - strand at 2656.394 kb on - strand at 2656.394 kb on - strand at 2656.397 kb on + strand at 2656.397 kb on + strand at 2656.397 kb on + strand at 2656.398 kb on - strand at 2656.829 kb on + strand, within Psest_2484 at 2656.829 kb on + strand, within Psest_2484 at 2656.829 kb on + strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.830 kb on - strand, within Psest_2484 at 2656.946 kb on + strand, within Psest_2484 at 2656.947 kb on - strand, within Psest_2484 at 2656.947 kb on - strand, within Psest_2484 at 2656.947 kb on - strand, within Psest_2484 at 2656.947 kb on - strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.949 kb on + strand, within Psest_2484 at 2656.950 kb on - strand, within Psest_2484 at 2656.950 kb on - strand, within Psest_2484 at 2656.950 kb on - strand, within Psest_2484 at 2657.129 kb on + strand, within Psest_2484 at 2657.129 kb on + strand, within Psest_2484 at 2657.129 kb on + strand, within Psest_2484 at 2657.129 kb on + strand, within Psest_2484 at 2657.130 kb on - strand, within Psest_2484 at 2657.130 kb on - strand, within Psest_2484 at 2657.239 kb on + strand, within Psest_2484 at 2657.240 kb on - strand, within Psest_2484 at 2657.240 kb on - strand, within Psest_2484 at 2657.291 kb on + strand, within Psest_2484 at 2657.291 kb on + strand, within Psest_2484 at 2657.292 kb on - strand, within Psest_2484
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Pseudomonas migulae strain N1B4 remove 2,654,869 + Psest_2482 0.26 -0.2 2,654,869 + Psest_2482 0.26 -0.7 2,654,869 + Psest_2482 0.26 +0.8 2,654,870 - Psest_2482 0.26 +0.1 2,654,870 - Psest_2482 0.26 +2.7 2,654,870 - Psest_2482 0.26 +0.6 2,654,870 - Psest_2482 0.26 +1.0 2,655,104 - Psest_2482 0.49 +1.3 2,655,104 - Psest_2482 0.49 +0.1 2,655,362 - Psest_2482 0.74 +1.2 2,655,362 - Psest_2482 0.74 -0.7 2,655,362 - Psest_2482 0.74 +1.7 2,655,385 + Psest_2482 0.76 +0.2 2,655,526 + Psest_2482 0.90 -0.3 2,655,526 + Psest_2482 0.90 -0.7 2,655,526 + Psest_2482 0.90 +1.4 2,655,526 + Psest_2482 0.90 +1.8 2,655,526 + Psest_2482 0.90 -0.4 2,655,545 + +1.9 2,655,546 - -0.4 2,655,576 + -1.6 2,655,577 - -0.9 2,655,625 + -0.0 2,655,626 - +0.4 2,655,626 - -1.5 2,655,657 + -2.2 2,655,714 - +0.3 2,655,728 - +3.3 2,655,777 + +0.6 2,655,777 + +0.5 2,655,777 + +1.7 2,655,777 + -0.1 2,655,777 + +0.3 2,655,777 + +0.0 2,655,777 + -2.5 2,655,777 + -2.2 2,655,778 - -0.4 2,655,778 - +2.2 2,655,778 - +0.3 2,655,778 - -0.1 2,655,778 - +0.5 2,655,778 - -1.0 2,655,778 - -0.5 2,655,778 - -1.1 2,655,778 - +1.6 2,655,778 - +0.6 2,655,780 + -0.8 2,655,855 + +0.5 2,655,855 + +0.5 2,655,855 + +1.0 2,655,855 + -1.7 2,655,855 + -1.6 2,655,856 - -1.0 2,655,856 - +0.4 2,655,977 + Psest_2483 0.27 +0.7 2,655,977 + Psest_2483 0.27 +1.6 2,655,978 - Psest_2483 0.27 -0.8 2,655,978 - Psest_2483 0.27 +3.4 2,656,034 + Psest_2483 0.40 -2.7 2,656,035 - Psest_2483 0.40 +0.6 2,656,035 - Psest_2483 0.40 +0.7 2,656,035 - Psest_2483 0.40 +0.3 2,656,290 - +0.3 2,656,393 + +0.3 2,656,393 + -1.6 2,656,393 + +0.5 2,656,394 - +0.1 2,656,394 - -0.8 2,656,394 - +0.6 2,656,394 - +2.4 2,656,397 + -0.1 2,656,397 + +0.2 2,656,397 + +1.4 2,656,398 - +0.8 2,656,829 + Psest_2484 0.25 -0.4 2,656,829 + Psest_2484 0.25 -1.9 2,656,829 + Psest_2484 0.25 +0.3 2,656,830 - Psest_2484 0.25 +0.4 2,656,830 - Psest_2484 0.25 +1.1 2,656,830 - Psest_2484 0.25 -0.9 2,656,830 - Psest_2484 0.25 -0.5 2,656,830 - Psest_2484 0.25 +0.8 2,656,830 - Psest_2484 0.25 -1.0 2,656,830 - Psest_2484 0.25 -0.8 2,656,830 - Psest_2484 0.25 -0.6 2,656,830 - Psest_2484 0.25 -0.9 2,656,946 + Psest_2484 0.31 +0.8 2,656,947 - Psest_2484 0.31 -0.3 2,656,947 - Psest_2484 0.31 +1.9 2,656,947 - Psest_2484 0.31 +2.0 2,656,947 - Psest_2484 0.31 +0.5 2,656,949 + Psest_2484 0.31 -0.4 2,656,949 + Psest_2484 0.31 -0.5 2,656,949 + Psest_2484 0.31 -0.5 2,656,949 + Psest_2484 0.31 -0.4 2,656,949 + Psest_2484 0.31 +0.2 2,656,949 + Psest_2484 0.31 -0.4 2,656,949 + Psest_2484 0.31 +1.7 2,656,949 + Psest_2484 0.31 +0.6 2,656,950 - Psest_2484 0.31 +0.4 2,656,950 - Psest_2484 0.31 +0.5 2,656,950 - Psest_2484 0.31 -1.8 2,657,129 + Psest_2484 0.41 -0.1 2,657,129 + Psest_2484 0.41 +0.8 2,657,129 + Psest_2484 0.41 -0.1 2,657,129 + Psest_2484 0.41 +2.1 2,657,130 - Psest_2484 0.41 +1.9 2,657,130 - Psest_2484 0.41 -2.4 2,657,239 + Psest_2484 0.46 -2.1 2,657,240 - Psest_2484 0.47 -1.2 2,657,240 - Psest_2484 0.47 -0.3 2,657,291 + Psest_2484 0.49 -0.3 2,657,291 + Psest_2484 0.49 -0.9 2,657,292 - Psest_2484 0.49 +3.5
Or see this region's nucleotide sequence