Strain Fitness in Pseudomonas stutzeri RCH2

Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4390

Experiment: RCH2 grown on a colony of N2A2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	RCH2 grown on a colony of N2A2
				remove
8,923	+	Psest_4389	0.41	-2.6
8,923	+	Psest_4389	0.41	-0.5
8,923	+	Psest_4389	0.41	+1.5
8,924	-	Psest_4389	0.41	-2.4
8,944	+	Psest_4389	0.42	+2.8
8,945	-	Psest_4389	0.42	-0.8
9,004	+	Psest_4389	0.46	-1.0
9,004	+	Psest_4389	0.46	+2.1
9,054	+	Psest_4389	0.49	-0.1
9,054	+	Psest_4389	0.49	-1.1
9,054	+	Psest_4389	0.49	-2.5
9,201	+	Psest_4389	0.58	-1.7
9,201	+	Psest_4389	0.58	+2.0
9,250	+	Psest_4389	0.60	+4.3
9,250	+	Psest_4389	0.60	+2.1
9,251	-	Psest_4389	0.61	-0.1
9,251	-	Psest_4389	0.61	-1.7
9,251	-	Psest_4389	0.61	-1.7
9,268	+	Psest_4389	0.62	-0.2
9,268	+	Psest_4389	0.62	+6.4
9,272	+	Psest_4389	0.62	+0.6
9,272	+	Psest_4389	0.62	-2.7
9,273	-	Psest_4389	0.62	-0.1
9,408	+	Psest_4389	0.70	-1.4
9,408	+	Psest_4389	0.70	+0.7
9,408	+	Psest_4389	0.70	-2.1
9,408	+	Psest_4389	0.70	-1.3
9,409	-	Psest_4389	0.70	+0.6
9,421	+	Psest_4389	0.71	-0.3
9,421	+	Psest_4389	0.71	-2.2
9,421	+	Psest_4389	0.71	+1.8
9,421	+	Psest_4389	0.71	+0.4
9,421	+	Psest_4389	0.71	-1.6
9,421	+	Psest_4389	0.71	-0.1
9,421	+	Psest_4389	0.71	-3.5
9,421	+	Psest_4389	0.71	-1.3
9,421	+	Psest_4389	0.71	+2.2
9,421	+	Psest_4389	0.71	-1.5
9,421	+	Psest_4389	0.71	-1.8
9,421	+	Psest_4389	0.71	-1.4
9,421	+	Psest_4389	0.71	-0.8
9,421	+	Psest_4389	0.71	-1.9
9,421	+	Psest_4389	0.71	-0.8
9,422	-	Psest_4389	0.71	-1.7
9,422	-	Psest_4389	0.71	-3.6
9,422	-	Psest_4389	0.71	+3.4
9,422	-	Psest_4389	0.71	-0.1
9,422	-	Psest_4389	0.71	-1.2
9,422	-	Psest_4389	0.71	-1.7
9,422	-	Psest_4389	0.71	-1.5
9,422	-	Psest_4389	0.71	-2.7
9,422	-	Psest_4389	0.71	-1.6
9,422	-	Psest_4389	0.71	-2.1
9,422	-	Psest_4389	0.71	+0.1
9,422	-	Psest_4389	0.71	-2.0
9,422	-	Psest_4389	0.71	-1.6
9,422	-	Psest_4389	0.71	+0.5
9,422	-	Psest_4389	0.71	-1.8
9,422	-	Psest_4389	0.71	-2.7
9,422	-	Psest_4389	0.71	-1.1
9,422	-	Psest_4389	0.71	-0.6
9,422	-	Psest_4389	0.71	-3.2
9,422	-	Psest_4389	0.71	-1.7
9,453	+	Psest_4389	0.73	-1.2
9,453	+	Psest_4389	0.73	-1.7
9,453	+	Psest_4389	0.73	+1.5
9,453	+	Psest_4389	0.73	-0.3
9,453	+	Psest_4389	0.73	+0.4
9,489	+	Psest_4389	0.75	+2.7
9,489	+	Psest_4389	0.75	-1.5
9,489	+	Psest_4389	0.75	-0.6
9,489	+	Psest_4389	0.75	-0.5
9,489	+	Psest_4389	0.75	+0.7
9,489	+	Psest_4389	0.75	-1.1
9,489	+	Psest_4389	0.75	-2.8
9,489	+	Psest_4389	0.75	+0.5
9,489	+	Psest_4389	0.75	+3.0
9,489	+	Psest_4389	0.75	-0.2
9,489	+	Psest_4389	0.75	+1.2
9,489	+	Psest_4389	0.75	-2.3
9,489	+	Psest_4389	0.75	-1.8
9,489	+	Psest_4389	0.75	+1.7
9,489	+	Psest_4389	0.75	-0.2
9,489	+	Psest_4389	0.75	+1.5
9,489	+	Psest_4389	0.75	-0.2
9,490	-	Psest_4389	0.75	-3.4
9,490	-	Psest_4389	0.75	+0.3
9,493	+	Psest_4389	0.75	+3.2
9,493	+	Psest_4389	0.75	-2.7
9,493	+	Psest_4389	0.75	+0.8
9,493	+	Psest_4389	0.75	-0.5
9,493	+	Psest_4389	0.75	-1.0
9,493	+	Psest_4389	0.75	+1.5
9,493	+	Psest_4389	0.75	-1.3
9,513	+	Psest_4389	0.76	+0.5
9,513	+	Psest_4389	0.76	+1.7
9,513	+	Psest_4389	0.76	-0.7
9,513	+	Psest_4389	0.76	-1.0
9,513	+	Psest_4389	0.76	-0.1
9,513	+	Psest_4389	0.76	-1.8
9,513	+	Psest_4389	0.76	+0.4
9,513	+	Psest_4389	0.76	-0.5
9,513	+	Psest_4389	0.76	-0.1
9,513	+	Psest_4389	0.76	+2.1
9,513	+	Psest_4389	0.76	-1.1
9,514	-	Psest_4389	0.76	-0.5
9,549	+	Psest_4389	0.78	-3.3
9,549	+	Psest_4389	0.78	+0.8
9,549	+	Psest_4389	0.78	-0.5
9,549	+	Psest_4389	0.78	-0.4
9,549	+	Psest_4389	0.78	+0.4
9,549	+	Psest_4389	0.78	+1.0
9,549	+	Psest_4389	0.78	-0.2
9,549	+	Psest_4389	0.78	-1.8
9,549	+	Psest_4389	0.78	-2.3
9,549	+	Psest_4389	0.78	-0.7
9,549	+	Psest_4389	0.78	+1.2
9,549	+	Psest_4389	0.78	-0.4
9,549	+	Psest_4389	0.78	-0.0
9,549	+	Psest_4389	0.78	+0.7
9,549	+	Psest_4389	0.78	-0.6
9,549	+	Psest_4389	0.78	+2.7
9,549	+	Psest_4389	0.78	-0.7
9,549	+	Psest_4389	0.78	+3.3
9,549	+	Psest_4389	0.78	+1.5
9,549	+	Psest_4389	0.78	-1.2
9,549	+	Psest_4389	0.78	-0.3
9,549	+	Psest_4389	0.78	+0.4
9,549	+	Psest_4389	0.78	-0.1
9,549	+	Psest_4389	0.78	+0.9
9,549	+	Psest_4389	0.78	-0.8
9,549	+	Psest_4389	0.78	-2.7
9,549	+	Psest_4389	0.78	-1.8
9,549	+	Psest_4389	0.78	-0.8
9,549	+	Psest_4389	0.78	+2.0
9,549	+	Psest_4389	0.78	-2.1
9,549	+	Psest_4389	0.78	+0.6
9,549	+	Psest_4389	0.78	-3.0
9,549	+	Psest_4389	0.78	+1.5
9,549	+	Psest_4389	0.78	-3.2
9,549	+	Psest_4389	0.78	-0.9
9,549	+	Psest_4389	0.78	-1.5
9,549	+	Psest_4389	0.78	+0.7
9,549	+	Psest_4389	0.78	+2.1
9,549	+	Psest_4389	0.78	-1.2
9,549	+	Psest_4389	0.78	+0.7
9,549	+	Psest_4389	0.78	-1.7
9,549	+	Psest_4389	0.78	+1.5
9,549	+	Psest_4389	0.78	-2.1
9,549	+	Psest_4389	0.78	-0.2
9,549	+	Psest_4389	0.78	-0.8
9,549	+	Psest_4389	0.78	-0.7
9,549	+	Psest_4389	0.78	-1.1
9,549	+	Psest_4389	0.78	-2.7
9,549	+	Psest_4389	0.78	-1.3
9,550	-	Psest_4389	0.78	+0.1
9,550	-	Psest_4389	0.78	-0.5
9,550	-	Psest_4389	0.78	-0.8
9,550	-	Psest_4389	0.78	+1.1
9,550	-	Psest_4389	0.78	-2.2
9,550	-	Psest_4389	0.78	+0.5
9,550	-	Psest_4389	0.78	-2.8
9,550	-	Psest_4389	0.78	-0.5
9,550	-	Psest_4389	0.78	+2.1
9,550	-	Psest_4389	0.78	-1.8
9,550	-	Psest_4389	0.78	-0.8
9,550	-	Psest_4389	0.78	-1.8
9,616	+	Psest_4389	0.82	-1.1
9,627	+	Psest_4389	0.83	+0.9
9,628	-	Psest_4389	0.83	-2.6
9,628	-	Psest_4389	0.83	-0.2
9,706	+	Psest_4389	0.88	+1.2
9,706	+	Psest_4389	0.88	+1.5
9,706	+	Psest_4389	0.88	+0.8
9,706	+	Psest_4389	0.88	+0.5
9,707	-	Psest_4389	0.88	-1.7
9,707	-	Psest_4389	0.88	-2.0
9,707	-	Psest_4389	0.88	+0.5
9,707	-	Psest_4389	0.88	+1.7
9,707	-	Psest_4389	0.88	-1.3
9,727	+	Psest_4389	0.89	-2.1
9,727	+	Psest_4389	0.89	+4.1
9,727	+	Psest_4389	0.89	-1.1
9,727	+	Psest_4389	0.89	-0.3
9,727	+	Psest_4389	0.89	-2.3
9,727	+	Psest_4389	0.89	-0.5
9,727	+	Psest_4389	0.89	-0.5
9,727	+	Psest_4389	0.89	-0.8
9,727	+	Psest_4389	0.89	+1.9
9,727	+			-0.1
9,727	+	Psest_4389	0.89	-0.9
9,727	+	Psest_4389	0.89	+8.6
9,727	+	Psest_4389	0.89	+2.3
9,727	+	Psest_4389	0.89	+4.1
9,727	+	Psest_4389	0.89	-0.0
9,727	+	Psest_4389	0.89	-2.1
9,727	+	Psest_4389	0.89	+1.2
9,727	+	Psest_4389	0.89	+4.4
9,727	+	Psest_4389	0.89	+2.7
9,727	+	Psest_4389	0.89	-2.8
9,727	+	Psest_4389	0.89	-2.8
9,727	+	Psest_4389	0.89	-1.5
9,727	+	Psest_4389	0.89	+1.7
9,727	+	Psest_4389	0.89	+1.0
9,727	+	Psest_4389	0.89	-1.6
9,727	+	Psest_4389	0.89	+2.7
9,727	+	Psest_4389	0.89	-1.8
9,727	+	Psest_4389	0.89	+1.5
9,727	+	Psest_4389	0.89	+1.9
9,727	+	Psest_4389	0.89	+0.1
9,727	+	Psest_4389	0.89	+2.2
9,727	+	Psest_4389	0.89	-0.7
9,727	+	Psest_4389	0.89	-1.7
9,727	+	Psest_4389	0.89	-0.5
9,727	+	Psest_4389	0.89	-3.2
9,727	+	Psest_4389	0.89	-0.1
9,727	+	Psest_4389	0.89	+0.6
9,727	+	Psest_4389	0.89	-0.3
9,727	+	Psest_4389	0.89	-0.6
9,727	+	Psest_4389	0.89	-1.3
9,727	+	Psest_4389	0.89	-0.8
9,727	+	Psest_4389	0.89	-0.8
9,727	+	Psest_4389	0.89	-0.6
9,788	+			-0.7
9,788	+			+0.1
9,788	+			-3.0
9,788	+			-1.1
9,788	+			+1.0
9,788	+			-1.3
9,788	+			-0.8
9,788	+			-0.7
9,788	+			-3.3
9,788	+			-0.8
9,788	+			+0.0
9,788	+			-0.0
9,788	+			-2.1
9,789	-			-0.5
9,789	-			-2.4
9,789	-			-0.8
9,789	-			-1.6
9,789	-			+0.7
9,789	-			+2.1
9,789	-			-2.3
9,789	-			+1.1
9,789	-			-2.7
9,843	+			-1.4
9,843	+			-0.5
9,843	+			+1.5
9,843	+			-2.1
9,844	-			-1.3
9,844	-			-1.4
9,844	-			-0.9
9,844	-			-0.3
9,844	-			-3.4
9,844	-			-0.1
9,844	-			-3.0
9,844	-			-2.4
9,844	-			-4.0
9,861	+			-1.3
9,861	+			-0.8
9,861	+			-2.1
9,861	+			+2.6
9,862	-			+0.0
9,862	-			-2.9
9,862	-			+1.7
9,862	-			-1.8
9,862	-			+0.6
9,875	+			+0.5
9,875	+			-1.5
9,876	-			-0.2
9,889	+			-0.1
9,889	+			-2.6
9,889	+			+2.1
9,889	+			-2.2
9,889	+			+0.2
9,889	+			+1.0
9,889	+			+1.7
9,889	+			-0.0
9,889	+			-0.0
9,889	+			+1.7
9,889	+			+0.1
9,889	+			+1.4
9,889	+			-0.8
9,889	+			-1.7
9,889	+			-2.3
9,889	+			-2.5
9,889	+			+0.0
9,889	+			+1.8
9,889	+			-0.5
9,889	+			-0.1
9,889	+			+1.0
9,889	+			+1.2
9,889	+			-1.7
9,889	+			-0.9
9,889	+			+1.3
9,889	+			+0.5
9,889	+			+2.7
9,890	-			-0.8
9,890	-			-0.8
9,890	-			-0.1
9,890	-			-0.8
9,890	-			+1.0
9,890	-			-1.7
9,890	-			+1.3
9,890	-			+3.7
9,890	-			-1.4
9,890	-			+0.3
9,890	-			-0.8
9,890	-			+2.8
9,890	-			+0.5
9,890	-			-0.1
9,890	-			-0.8
9,890	-			+1.5
9,890	-			-1.1
9,890	-			-1.5
9,890	-			+1.0
9,890	-			-1.5
9,890	-			-2.0
9,890	-			+0.5
9,890	-			-1.7
9,890	-			+0.2
9,890	-			-0.8
9,890	-			+0.8
9,890	-			+0.7
9,890	-			-1.4
9,890	-			-0.1
9,890	-			+0.7
9,890	-			-0.3
9,890	-			-0.5
9,976	+	Psest_4390	0.16	+0.5
9,976	+	Psest_4390	0.16	+1.5
9,976	+	Psest_4390	0.16	-0.5
9,976	+	Psest_4390	0.16	-0.5
9,977	-	Psest_4390	0.16	-0.5
9,977	-	Psest_4390	0.16	-1.5
9,977	-	Psest_4390	0.16	-1.6
9,977	-	Psest_4390	0.16	-2.8
9,977	-	Psest_4390	0.16	-2.0
9,977	-	Psest_4390	0.16	-1.9
9,977	-	Psest_4390	0.16	+1.5
9,977	-	Psest_4390	0.16	-0.5
9,977	-	Psest_4390	0.16	-3.8
9,987	+	Psest_4390	0.19	-1.1
9,987	+	Psest_4390	0.19	-0.9
9,987	+	Psest_4390	0.19	+2.3
9,988	-	Psest_4390	0.19	-0.3
10,317	+			-1.7
10,329	+			-2.5
10,329	+			-3.0
10,342	+			+0.3
10,429	-			-0.3
10,470	+			-1.7
10,471	-			-0.1
10,482	+			+1.3
10,483	-			-1.1
10,683	+			-1.8
10,796	+			-1.2
10,796	+			+0.1
10,796	+			-0.1
10,819	+			+1.0
10,819	+			+5.0
10,819	+			-2.3
10,819	+			+3.7
10,819	+			-1.4
10,819	+			-0.2
10,819	+			+0.7
10,820	-			-2.3
10,820	-			+3.3
10,820	-			-0.8
10,820	-			+0.2
10,963	-			-1.5
10,965	+			-1.5
10,993	+			-0.3
11,012	+			+0.2
11,021	+			-0.3
11,021	+			-1.3
11,021	+			-0.1
11,021	+			-2.1
11,021	+			+2.1
11,021	+			-0.5
11,021	+			-0.5
11,021	+			-1.1
11,021	+			+3.4
11,021	+			-1.4
11,021	+			-0.8
11,021	+			+0.0
11,021	+			+5.9
11,021	+			+3.5
11,021	+			+0.9
11,021	+			-0.5
11,021	+			-0.1
11,022	-			-0.8
11,022	-			-0.7
11,022	-			-0.3
11,022	-			-0.4
11,022	-			-0.5
11,022	-			-0.1
11,022	-			+0.2
11,022	-			+1.5
11,022	-			+0.5
11,022	-			-2.3
11,043	+			-0.2
11,044	-			-1.4
11,055	-			+0.5
11,144	-	Psest_4391	0.24	-1.3
11,162	+	Psest_4391	0.27	-1.8
11,162	+	Psest_4391	0.27	-1.7
11,163	-	Psest_4391	0.27	-1.0
11,163	-	Psest_4391	0.27	+1.3
11,163	-	Psest_4391	0.27	-0.1
11,163	-	Psest_4391	0.27	-2.0
11,224	+	Psest_4391	0.38	-0.7
11,224	+	Psest_4391	0.38	-1.3
11,226	+	Psest_4391	0.38	-1.2
11,226	+	Psest_4391	0.38	+1.0
11,226	+	Psest_4391	0.38	+1.5
11,226	+	Psest_4391	0.38	-1.1
11,226	+	Psest_4391	0.38	-2.0
11,226	+	Psest_4391	0.38	-1.8
11,226	+	Psest_4391	0.38	-1.2
11,226	+	Psest_4391	0.38	-1.3
11,226	+	Psest_4391	0.38	-2.0
11,226	+	Psest_4391	0.38	+0.2
11,226	+	Psest_4391	0.38	+0.9
11,226	+	Psest_4391	0.38	+0.8
11,226	+	Psest_4391	0.38	-2.0
11,226	+	Psest_4391	0.38	-0.3
11,226	+	Psest_4391	0.38	+1.7
11,226	+	Psest_4391	0.38	-1.5
11,226	+	Psest_4391	0.38	-1.7
11,226	+	Psest_4391	0.38	-3.4
11,226	+	Psest_4391	0.38	-0.5
11,226	+	Psest_4391	0.38	-1.3
11,226	+	Psest_4391	0.38	-0.1
11,226	+	Psest_4391	0.38	-1.8
11,226	+	Psest_4391	0.38	+1.5
11,226	+	Psest_4391	0.38	+0.1
11,226	+	Psest_4391	0.38	-2.5
11,227	-	Psest_4391	0.38	+0.3
11,227	-	Psest_4391	0.38	+0.3
11,227	-	Psest_4391	0.38	-1.5
11,227	-	Psest_4391	0.38	+0.7
11,227	-	Psest_4391	0.38	-0.5
11,227	-			-1.1
11,227	-	Psest_4391	0.38	+0.9
11,227	-	Psest_4391	0.38	-0.3
11,227	-	Psest_4391	0.38	-0.1
11,227	-	Psest_4391	0.38	-2.2
11,227	-	Psest_4391	0.38	-2.2
11,227	-	Psest_4391	0.38	-1.7
11,227	-	Psest_4391	0.38	+1.8
11,227	-	Psest_4391	0.38	-1.8
11,227	-	Psest_4391	0.38	+1.5
11,230	+	Psest_4391	0.39	-0.5
11,230	+	Psest_4391	0.39	+0.3
11,230	+	Psest_4391	0.39	-1.8
11,230	+	Psest_4391	0.39	-2.6
11,230	+	Psest_4391	0.39	-1.4
11,230	+	Psest_4391	0.39	+1.4
11,230	+	Psest_4391	0.39	-0.8
11,230	+	Psest_4391	0.39	-2.2
11,230	+	Psest_4391	0.39	-0.8
11,230	+	Psest_4391	0.39	-0.4
11,230	+	Psest_4391	0.39	+0.9
11,230	+	Psest_4391	0.39	-1.3
11,230	+	Psest_4391	0.39	-0.1
11,230	+	Psest_4391	0.39	-2.8
11,230	+	Psest_4391	0.39	-1.3
11,230	+	Psest_4391	0.39	-0.8
11,230	+	Psest_4391	0.39	-3.4
11,230	+	Psest_4391	0.39	-0.7
11,230	+	Psest_4391	0.39	-0.1
11,230	+	Psest_4391	0.39	+0.5
11,230	+	Psest_4391	0.39	-2.0
11,230	+	Psest_4391	0.39	-0.5
11,230	+	Psest_4391	0.39	-1.8
11,230	+	Psest_4391	0.39	-1.0
11,230	+	Psest_4391	0.39	-0.1
11,230	+	Psest_4391	0.39	-1.3
11,230	+	Psest_4391	0.39	-1.3
11,230	+	Psest_4391	0.39	-0.5
11,230	+	Psest_4391	0.39	-0.5
11,230	+	Psest_4391	0.39	+1.3
11,230	+	Psest_4391	0.39	+1.8
11,230	+	Psest_4391	0.39	-1.8
11,230	+	Psest_4391	0.39	-3.9
11,230	+	Psest_4391	0.39	-0.8
11,230	+	Psest_4391	0.39	-2.0
11,230	+	Psest_4391	0.39	-2.4
11,231	-	Psest_4391	0.39	+1.8
11,231	-	Psest_4391	0.39	-1.8
11,231	-	Psest_4391	0.39	-0.4
11,231	-	Psest_4391	0.39	-1.3
11,231	-	Psest_4391	0.39	+1.4
11,231	-	Psest_4391	0.39	-0.1
11,231	-	Psest_4391	0.39	+1.5
11,231	-	Psest_4391	0.39	-3.1
11,231	-	Psest_4391	0.39	-1.3
11,231	-	Psest_4391	0.39	+1.5
11,231	-	Psest_4391	0.39	-1.7
11,231	-	Psest_4391	0.39	+0.4
11,231	-	Psest_4391	0.39	-1.1
11,231	-	Psest_4391	0.39	-1.5
11,231	-	Psest_4391	0.39	-2.8
11,231	-	Psest_4391	0.39	-0.9
11,231	-	Psest_4391	0.39	+1.5
11,231	-	Psest_4391	0.39	-1.2
11,231	-	Psest_4391	0.39	+0.6
11,231	-	Psest_4391	0.39	+0.4
11,231	-	Psest_4391	0.39	-2.1
11,231	-	Psest_4391	0.39	-1.3
11,231	-	Psest_4391	0.39	-1.3
11,231	-	Psest_4391	0.39	-0.4
11,231	-	Psest_4391	0.39	-0.1
11,231	-	Psest_4391	0.39	-1.8
11,231	-	Psest_4391	0.39	-2.5
11,231	-	Psest_4391	0.39	-1.8
11,231	-	Psest_4391	0.39	-0.2
11,258	+	Psest_4391	0.43	+2.7
11,259	-	Psest_4391	0.43	-2.0

Or see this region's nucleotide sequence