Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2065

Experiment: RCH2 grown on a colony of N2A2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2064 and Psest_2065 are separated by 1 nucleotidesPsest_2065 and Psest_2066 are separated by 1 nucleotides Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245 _2064 Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266 _2065 Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341 _2066 Position (kb) 2191 2192 2193Strain fitness (log2 ratio) -1 0 1 2at 2190.551 kb on - strand, within Psest_2064at 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.566 kb on + strand, within Psest_2065at 2191.695 kb on - strand, within Psest_2065at 2191.699 kb on - strand, within Psest_2065at 2192.926 kb on + strand, within Psest_2066

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2A2
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2,190,551 - Psest_2064 0.58 -1.1
2,191,249 - -0.2
2,191,249 - +2.1
2,191,249 - +0.7
2,191,566 + Psest_2065 0.31 -1.1
2,191,695 - Psest_2065 0.44 -0.5
2,191,699 - Psest_2065 0.44 -0.2
2,192,926 + Psest_2066 0.61 +2.3

Or see this region's nucleotide sequence