Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1603

Experiment: RCH2 grown on a colony of N2A2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1601 and Psest_1602 overlap by 4 nucleotidesPsest_1602 and Psest_1603 are separated by 139 nucleotidesPsest_1603 and Psest_1604 overlap by 1 nucleotidesPsest_1604 and Psest_1605 overlap by 4 nucleotides Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825 _1601 Psest_1602: Psest_1602 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,705,822 to 1,706,499 _1602 Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375 _1603 Psest_1604: Psest_1604 - Thiol-disulfide isomerase and thioredoxins, at 1,708,375 to 1,709,190 _1604 Psest_1605: Psest_1605 - Protein-disulfide isomerase, at 1,709,187 to 1,709,954 _1605 Position (kb) 1706 1707 1708 1709Strain fitness (log2 ratio) -2 -1 0 1 2at 1705.920 kb on + strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.208 kb on - strand, within Psest_1602at 1706.526 kb on + strandat 1706.544 kb on - strandat 1706.622 kb on + strandat 1706.623 kb on - strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.627 kb on - strandat 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.826 kb on - strand, within Psest_1603at 1706.928 kb on - strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603at 1707.971 kb on + strand, within Psest_1603at 1707.972 kb on - strand, within Psest_1603at 1708.094 kb on + strand, within Psest_1603at 1708.097 kb on + strand, within Psest_1603at 1708.097 kb on + strand, within Psest_1603at 1708.098 kb on - strand, within Psest_1603at 1708.120 kb on + strand, within Psest_1603at 1708.121 kb on - strand, within Psest_1603at 1708.249 kb on - strandat 1708.561 kb on + strand, within Psest_1604at 1708.562 kb on - strand, within Psest_1604at 1708.570 kb on + strand, within Psest_1604at 1708.570 kb on + strand, within Psest_1604at 1708.834 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.211 kb on + strandat 1709.358 kb on + strand, within Psest_1605

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2A2
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1,705,920 + Psest_1602 0.14 -0.7
1,706,100 - Psest_1602 0.41 +1.0
1,706,100 - Psest_1602 0.41 -0.1
1,706,208 - Psest_1602 0.57 -1.6
1,706,526 + +0.3
1,706,544 - +2.5
1,706,622 + -1.8
1,706,623 - -2.5
1,706,626 + -0.0
1,706,626 + +0.4
1,706,626 + +0.4
1,706,626 + -1.6
1,706,626 + -0.9
1,706,626 + -0.2
1,706,626 + -0.8
1,706,627 - -0.6
1,706,819 + Psest_1603 0.10 +0.2
1,706,819 + Psest_1603 0.10 -1.2
1,706,819 + Psest_1603 0.10 -1.2
1,706,819 + Psest_1603 0.10 +0.1
1,706,819 + Psest_1603 0.10 -0.3
1,706,820 - Psest_1603 0.10 +0.2
1,706,820 - Psest_1603 0.10 -1.6
1,706,820 - Psest_1603 0.10 -0.6
1,706,820 - Psest_1603 0.10 -0.2
1,706,820 - Psest_1603 0.10 -0.2
1,706,820 - Psest_1603 0.10 -1.4
1,706,826 - Psest_1603 0.11 +1.1
1,706,928 - Psest_1603 0.17 -1.5
1,707,269 + Psest_1603 0.36 -0.2
1,707,269 + Psest_1603 0.36 -1.2
1,707,269 + Psest_1603 0.36 -0.0
1,707,269 + Psest_1603 0.36 -2.3
1,707,270 - Psest_1603 0.36 +0.5
1,707,270 - Psest_1603 0.36 +0.0
1,707,270 - Psest_1603 0.36 +0.4
1,707,971 + Psest_1603 0.77 -0.7
1,707,972 - Psest_1603 0.77 -1.2
1,708,094 + Psest_1603 0.84 +0.6
1,708,097 + Psest_1603 0.84 +0.2
1,708,097 + Psest_1603 0.84 -0.5
1,708,098 - Psest_1603 0.84 +0.2
1,708,120 + Psest_1603 0.85 +0.7
1,708,121 - Psest_1603 0.85 -1.6
1,708,249 - -2.5
1,708,561 + Psest_1604 0.23 +1.3
1,708,562 - Psest_1604 0.23 +0.9
1,708,570 + Psest_1604 0.24 -0.6
1,708,570 + Psest_1604 0.24 -0.4
1,708,834 + Psest_1604 0.56 -0.2
1,709,089 + Psest_1604 0.88 -2.1
1,709,089 + Psest_1604 0.88 -0.4
1,709,089 + Psest_1604 0.88 -1.0
1,709,089 + Psest_1604 0.88 +2.4
1,709,211 + -1.3
1,709,358 + Psest_1605 0.22 +2.4

Or see this region's nucleotide sequence