Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0129

Experiment: RCH2 grown on a colony of N2A2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of N2A2
126,857	-		Psest_0127	0.70	+0.4
126,874	+		Psest_0127	0.71	+0.6
126,874	+		Psest_0127	0.71	+5.1
126,874	+		Psest_0127	0.71	-1.0
126,874	+		Psest_0127	0.71	-1.6
126,874	+		Psest_0127	0.71	-1.2
126,874	+		Psest_0127	0.71	+3.8
126,874	+		Psest_0127	0.71	-0.0
126,874	+		Psest_0127	0.71	-2.4
126,874	+		Psest_0127	0.71	+1.3
126,874	+		Psest_0127	0.71	+0.4
126,874	+		Psest_0127	0.71	+0.1
126,874	+		Psest_0127	0.71	+0.3
126,874	+		Psest_0127	0.71	+1.2
126,875	-		Psest_0127	0.71	+0.2
126,875	-		Psest_0127	0.71	+0.9
126,875	-		Psest_0127	0.71	-0.1
126,875	-		Psest_0127	0.71	+0.5
126,875	-		Psest_0127	0.71	-0.1
126,875	-		Psest_0127	0.71	-1.4
126,988	+		Psest_0127	0.77	+0.6
126,989	-		Psest_0127	0.77	-1.7
127,128	-		Psest_0127	0.85	-0.6
127,168	+		Psest_0127	0.87	-0.7
127,168	+		Psest_0127	0.87	+0.6
127,168	+		Psest_0127	0.87	+0.7
127,168	+		Psest_0127	0.87	+0.1
127,168	+		Psest_0127	0.87	-0.9
127,168	+		Psest_0127	0.87	+0.7
127,168	+		Psest_0127	0.87	-1.3
127,168	+		Psest_0127	0.87	-2.9
127,168	+		Psest_0127	0.87	+1.2
127,168	+		Psest_0127	0.87	-2.3
127,169	-		Psest_0127	0.87	+0.3
127,169	-		Psest_0127	0.87	+3.6
127,169	-		Psest_0127	0.87	-0.6
127,169	-		Psest_0127	0.87	-0.1
127,169	-		Psest_0127	0.87	-1.0
127,169	-		Psest_0127	0.87	+4.6
127,169	-		Psest_0127	0.87	-0.1
127,169	-		Psest_0127	0.87	+0.9
127,169	-		Psest_0127	0.87	-1.7
127,169	-		Psest_0127	0.87	-0.1
127,169	-		Psest_0127	0.87	-0.6
127,350	+				+1.8
127,350	+				-0.5
127,350	+				+0.5
127,350	+				+1.0
127,351	-				+0.4
127,381	+				-0.1
127,381	+				-1.2
127,381	+				-1.0
127,381	+				-0.3
127,382	-				-0.0
127,382	-				-0.6
127,382	-				+0.9
127,405	-				+1.2
127,405	-				-2.4
127,625	+		Psest_0128	0.47	-0.6
127,625	+		Psest_0128	0.47	-2.5
127,625	+		Psest_0128	0.47	-0.1
127,625	+		Psest_0128	0.47	+1.7
127,625	+		Psest_0128	0.47	+0.8
127,625	+		Psest_0128	0.47	+1.8
127,625	+		Psest_0128	0.47	-0.1
127,626	-		Psest_0128	0.48	+0.4
127,626	-		Psest_0128	0.48	+2.1
127,626	-		Psest_0128	0.48	-0.5
127,626	-		Psest_0128	0.48	+0.4
127,626	-		Psest_0128	0.48	-1.3
127,701	-		Psest_0128	0.68	+1.2
127,804	-				+1.9
127,804	-				-1.2
127,804	-				-1.4
127,838	-				-2.5
127,839	+				-2.0
127,839	+				-1.4
127,839	+				-1.7
127,839	+				-0.6
127,840	-				-0.5
127,840	-				+0.0
127,840	-				-1.5
127,840	-				-0.9
127,840	-				-2.0
127,840	-				-0.2
127,840	-				+1.1
127,840	-				+1.6
127,840	-				-0.8
127,893	+		Psest_0129	0.14	-1.5
127,931	+		Psest_0129	0.20	-3.5
127,931	+		Psest_0129	0.20	-2.4
127,932	-		Psest_0129	0.20	+0.2
127,932	-		Psest_0129	0.20	-1.6
127,932	-		Psest_0129	0.20	-0.8
127,932	-		Psest_0129	0.20	-2.4
127,932	-		Psest_0129	0.20	-0.6
128,003	+		Psest_0129	0.32	-1.6
128,004	-		Psest_0129	0.32	-1.1
128,004	-		Psest_0129	0.32	-0.9
128,004	-		Psest_0129	0.32	-2.6
128,004	-		Psest_0129	0.32	-1.3
128,004	-		Psest_0129	0.32	-0.7
128,004	-		Psest_0129	0.32	-0.9
128,004	-		Psest_0129	0.32	+1.1
128,005	+		Psest_0129	0.32	+0.2
128,005	+		Psest_0129	0.32	-2.2
128,005	+		Psest_0129	0.32	-1.5
128,005	+		Psest_0129	0.32	+0.2
128,005	+		Psest_0129	0.32	-1.4
128,006	-		Psest_0129	0.32	-2.8
128,006	-		Psest_0129	0.32	-1.2
128,006	-		Psest_0129	0.32	-0.6
128,006	-		Psest_0129	0.32	-2.6
128,016	+		Psest_0129	0.34	-1.5
128,016	+		Psest_0129	0.34	-0.6
128,016	+		Psest_0129	0.34	-1.2
128,016	+		Psest_0129	0.34	-2.0
128,016	+		Psest_0129	0.34	-1.7
128,016	+		Psest_0129	0.34	-1.5
128,017	-		Psest_0129	0.34	-2.2
128,017	-		Psest_0129	0.34	+1.4
128,053	-		Psest_0129	0.39	-2.1
128,053	-		Psest_0129	0.39	-1.9
128,114	-		Psest_0129	0.49	+1.2
128,115	+		Psest_0129	0.49	-0.4
128,115	+		Psest_0129	0.49	-2.0
128,115	+		Psest_0129	0.49	-0.3
128,115	+		Psest_0129	0.49	-3.4
128,115	+		Psest_0129	0.49	-1.9
128,115	+		Psest_0129	0.49	-1.6
128,115	+		Psest_0129	0.49	-2.4
128,115	+		Psest_0129	0.49	-0.1
128,115	+		Psest_0129	0.49	-1.6
128,115	+		Psest_0129	0.49	-1.6
128,115	+		Psest_0129	0.49	-4.0
128,115	+		Psest_0129	0.49	-3.1
128,115	+		Psest_0129	0.49	-1.1
128,115	+		Psest_0129	0.49	-1.7
128,115	+		Psest_0129	0.49	+2.6
128,115	+		Psest_0129	0.49	-0.1
128,115	+		Psest_0129	0.49	+0.7
128,115	+		Psest_0129	0.49	-0.9
128,116	-		Psest_0129	0.49	-1.0
128,116	-		Psest_0129	0.49	-2.3
128,116	-		Psest_0129	0.49	-1.4
128,116	-		Psest_0129	0.49	-1.5
128,116	-		Psest_0129	0.49	-1.8
128,116	-		Psest_0129	0.49	-2.2
128,116	-		Psest_0129	0.49	-1.1
128,116	-		Psest_0129	0.49	-2.6
128,116	-		Psest_0129	0.49	-1.1
128,116	-		Psest_0129	0.49	-1.1
128,180	+		Psest_0129	0.59	-2.4
128,181	-		Psest_0129	0.60	-2.7
128,238	+		Psest_0129	0.69	-2.7
128,238	+		Psest_0129	0.69	+0.1
128,238	+		Psest_0129	0.69	-0.7
128,239	-		Psest_0129	0.69	-1.8
128,239	-		Psest_0129	0.69	-0.3
128,239	-		Psest_0129	0.69	-1.0
128,291	+		Psest_0129	0.77	-0.5
128,291	+		Psest_0129	0.77	-3.6
128,292	-		Psest_0129	0.77	-1.3
128,292	-		Psest_0129	0.77	-3.3
128,292	-		Psest_0129	0.77	-1.6
128,292	-		Psest_0129	0.77	-2.3
128,292	-		Psest_0129	0.77	+0.3
128,292	-		Psest_0129	0.77	+0.1
128,320	+		Psest_0129	0.81	-2.4
128,320	+		Psest_0129	0.81	-1.5
128,320	+		Psest_0129	0.81	+2.2
128,321	-		Psest_0129	0.82	-0.6
128,321	-		Psest_0129	0.82	-2.6
128,321	-		Psest_0129	0.82	-1.1
128,321	-		Psest_0129	0.82	-1.2
128,322	+		Psest_0129	0.82	-1.6
128,322	+		Psest_0129	0.82	-1.3
128,322	+		Psest_0129	0.82	-0.1
128,322	+		Psest_0129	0.82	-1.6
128,322	+		Psest_0129	0.82	-0.8
128,322	+		Psest_0129	0.82	-2.7
128,322	+		Psest_0129	0.82	-2.5
128,323	-		Psest_0129	0.82	-2.1
128,323	-		Psest_0129	0.82	-0.6
128,323	-		Psest_0129	0.82	-1.8
128,323	-		Psest_0129	0.82	+1.8
128,323	-		Psest_0129	0.82	-1.3
128,323	-		Psest_0129	0.82	-0.0
128,323	-		Psest_0129	0.82	-2.6
128,323	-		Psest_0129	0.82	-2.7
128,323	-		Psest_0129	0.82	-2.1
128,323	-		Psest_0129	0.82	-2.5
128,323	-		Psest_0129	0.82	+0.3
128,323	-		Psest_0129	0.82	+0.5
128,346	+		Psest_0129	0.86	-1.5
128,411	+				-1.9
128,468	+				-2.1
128,468	+				-2.2
128,468	+				+1.6
128,468	+				-0.5
128,469	-				+2.9
128,469	-				-1.7
128,469	-				-0.8
128,469	-				+1.1
128,502	+				-1.1
128,502	+				-0.2
128,502	+				-0.5
128,503	-				-0.1
128,546	+				-0.2
128,546	+				-1.7
128,546	+				-0.3
128,546	+				-1.1
128,546	+				-1.3
128,547	-				+1.6
128,547	-				+0.2
128,547	-				-0.5
128,547	-				-0.2
128,547	-				-0.1
128,547	-				-2.5
128,547	-				-0.8
128,547	-				-0.4
128,547	-				-1.3
128,547	-				-0.3
128,547	-				+1.0
128,547	-				-1.3
128,547	-				+0.6
128,547	-				+4.4
128,547	-				+1.9
128,547	-				-1.9
128,547	-				-0.1
128,547	-				-0.8
128,547	-				-0.5
128,578	-				+0.3
128,707	+		Psest_0130	0.14	+1.6
128,707	+		Psest_0130	0.14	-1.5
128,707	+		Psest_0130	0.14	-1.4
128,707	+		Psest_0130	0.14	-0.1
128,707	+		Psest_0130	0.14	-1.9
128,707	+		Psest_0130	0.14	-0.5
128,707	+		Psest_0130	0.14	-0.4
128,708	-		Psest_0130	0.14	+3.7
128,708	-		Psest_0130	0.14	-0.5
128,708	-		Psest_0130	0.14	-1.0
128,708	-		Psest_0130	0.14	+3.5
128,708	-		Psest_0130	0.14	-0.8
128,708	-		Psest_0130	0.14	-0.3
128,708	-		Psest_0130	0.14	-1.0
128,708	-		Psest_0130	0.14	+0.6
128,708	-		Psest_0130	0.14	+1.0
128,708	-		Psest_0130	0.14	+0.3
128,729	+		Psest_0130	0.15	-0.3
128,729	+		Psest_0130	0.15	-0.6
128,729	+		Psest_0130	0.15	-0.8
128,730	-		Psest_0130	0.15	-0.8
128,730	-		Psest_0130	0.15	+0.6
128,730	-		Psest_0130	0.15	+1.3
128,730	-		Psest_0130	0.15	-0.8
128,730	-		Psest_0130	0.15	-1.2
128,730	-		Psest_0130	0.15	-0.0
128,730	-		Psest_0130	0.15	-1.1
128,730	-		Psest_0130	0.15	-1.7
128,730	-		Psest_0130	0.15	+0.6
128,730	-		Psest_0130	0.15	+0.3
128,730	-		Psest_0130	0.15	-0.2
128,752	+		Psest_0130	0.17	+3.8
128,766	+		Psest_0130	0.17	-0.2
128,766	+		Psest_0130	0.17	-0.4
128,766	+		Psest_0130	0.17	+2.5
128,766	+		Psest_0130	0.17	-1.3
128,766	+		Psest_0130	0.17	-2.9
128,766	+		Psest_0130	0.17	-1.0
128,767	-		Psest_0130	0.17	-0.5
128,767	-		Psest_0130	0.17	+1.1
128,767	-		Psest_0130	0.17	-0.9
128,767	-		Psest_0130	0.17	-1.8
128,770	+		Psest_0130	0.17	-1.1
128,770	+		Psest_0130	0.17	+1.0
128,770	+		Psest_0130	0.17	-0.1
128,771	-		Psest_0130	0.18	+1.1
128,779	+		Psest_0130	0.18	+0.2
128,780	-		Psest_0130	0.18	+0.4
128,780	-		Psest_0130	0.18	+1.1
128,850	+		Psest_0130	0.22	-0.2
128,937	+		Psest_0130	0.26	+0.9
128,937	+		Psest_0130	0.26	-1.1
129,002	+		Psest_0130	0.30	+3.0
129,002	+		Psest_0130	0.30	+0.9
129,040	+		Psest_0130	0.32	-0.1
129,040	+		Psest_0130	0.32	-1.1
129,067	-		Psest_0130	0.33	-1.2
129,067	-		Psest_0130	0.33	-1.2
129,115	+		Psest_0130	0.35	+1.4
129,115	+		Psest_0130	0.35	-0.4
129,116	-		Psest_0130	0.35	+0.7
129,143	+		Psest_0130	0.37	-2.5
129,234	+		Psest_0130	0.42	+1.6
129,334	+		Psest_0130	0.47	+1.2
129,335	-		Psest_0130	0.47	-1.4
129,335	-		Psest_0130	0.47	-1.1
129,437	-		Psest_0130	0.52	-2.0
129,437	-		Psest_0130	0.52	-2.0
129,437	-		Psest_0130	0.52	+0.6
129,437	-		Psest_0130	0.52	-0.1
129,437	-		Psest_0130	0.52	-1.3