Experiment: RCH2 grown on a colony of N2A2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0736 and Psest_0737 are separated by 189 nucleotides Psest_0737 and Psest_0738 are separated by 13 nucleotides
Psest_0736: Psest_0736 - Methyl-accepting chemotaxis protein, at 808,143 to 810,065
_0736
Psest_0737: Psest_0737 - Cu(I)-responsive transcriptional regulator, at 810,255 to 810,698
_0737
Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090
_0738
Position (kb) 810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 809.356 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.498 kb on + strand, within Psest_0736 at 809.498 kb on + strand, within Psest_0736 at 809.499 kb on - strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand at 809.501 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.584 kb on + strand, within Psest_0736 at 809.585 kb on - strand, within Psest_0736 at 809.585 kb on - strand, within Psest_0736 at 809.686 kb on + strand, within Psest_0736 at 809.686 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.060 kb on - strand at 810.060 kb on - strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.152 kb on - strand at 810.165 kb on + strand at 810.165 kb on + strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.641 kb on - strand, within Psest_0737 at 810.757 kb on + strand at 810.845 kb on + strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 811.374 kb on - strand, within Psest_0738 at 811.465 kb on + strand, within Psest_0738 at 811.465 kb on + strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.638 kb on + strand, within Psest_0738
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2A2 remove 809,356 + Psest_0736 0.63 -1.5 809,461 + Psest_0736 0.69 -1.8 809,461 + Psest_0736 0.69 +0.6 809,461 + Psest_0736 0.69 -0.5 809,461 + Psest_0736 0.69 -2.2 809,461 + Psest_0736 0.69 +0.2 809,461 + Psest_0736 0.69 -0.2 809,461 + Psest_0736 0.69 +2.1 809,461 + Psest_0736 0.69 +0.6 809,461 + Psest_0736 0.69 -0.2 809,462 - Psest_0736 0.69 +0.1 809,462 - Psest_0736 0.69 +2.3 809,462 - Psest_0736 0.69 -2.6 809,462 - Psest_0736 0.69 +4.1 809,462 - Psest_0736 0.69 +2.3 809,462 - Psest_0736 0.69 +0.8 809,498 + Psest_0736 0.70 +4.3 809,498 + Psest_0736 0.70 -0.4 809,499 - Psest_0736 0.71 +0.2 809,500 + Psest_0736 0.71 -1.2 809,500 + Psest_0736 0.71 -2.6 809,500 + Psest_0736 0.71 +2.2 809,501 - Psest_0736 0.71 -1.4 809,501 - Psest_0736 0.71 -0.7 809,501 - Psest_0736 0.71 +0.4 809,501 - Psest_0736 0.71 -2.7 809,501 - -1.4 809,501 - Psest_0736 0.71 +0.8 809,516 - Psest_0736 0.71 -0.4 809,516 - Psest_0736 0.71 -0.6 809,516 - Psest_0736 0.71 +3.1 809,584 + Psest_0736 0.75 +1.0 809,585 - Psest_0736 0.75 +2.2 809,585 - Psest_0736 0.75 +0.4 809,686 + Psest_0736 0.80 -0.5 809,686 + Psest_0736 0.80 -0.4 809,809 + Psest_0736 0.87 +0.6 809,809 + Psest_0736 0.87 -0.9 809,809 + Psest_0736 0.87 -0.8 809,809 + Psest_0736 0.87 +1.5 809,809 + Psest_0736 0.87 +0.9 809,810 - Psest_0736 0.87 -2.7 809,810 - Psest_0736 0.87 +0.1 809,810 - Psest_0736 0.87 -1.0 810,059 + +0.1 810,059 + +1.5 810,059 + +0.4 810,059 + +2.5 810,059 + -1.6 810,060 - +0.3 810,060 - +1.3 810,077 + -0.9 810,077 + +0.5 810,078 - +1.5 810,078 - +0.3 810,078 - -1.2 810,078 - -0.9 810,078 - +0.8 810,084 + +0.3 810,084 + +1.0 810,084 + -0.1 810,084 + +1.4 810,085 - -2.2 810,085 - -0.2 810,085 - -0.1 810,152 - +1.5 810,165 + -2.2 810,165 + -1.9 810,166 - +2.8 810,166 - +0.4 810,166 - +1.3 810,641 - Psest_0737 0.87 +3.6 810,757 + +1.6 810,845 + -3.6 810,846 - -1.7 810,846 - +2.2 810,846 - +0.7 810,846 - +3.9 810,846 - +0.9 810,846 - -1.9 810,846 - -1.7 810,846 - +1.4 810,846 - +1.3 811,374 - Psest_0738 0.28 -2.2 811,465 + Psest_0738 0.32 +0.3 811,465 + Psest_0738 0.32 -0.9 811,466 - Psest_0738 0.32 +0.5 811,466 - -1.6 811,466 - Psest_0738 0.32 -0.4 811,466 - Psest_0738 0.32 -1.1 811,466 - Psest_0738 0.32 +1.8 811,638 + Psest_0738 0.39 +0.2
Or see this region's nucleotide sequence