Experiment: RCH2 grown on a colony of N2A2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0070 and Psest_0071 overlap by 13 nucleotides Psest_0071 and Psest_0072 are separated by 96 nucleotides
Psest_0070: Psest_0070 - Glycosyltransferase, at 70,720 to 71,904
_0070
Psest_0071: Psest_0071 - UDP-galactopyranose mutase, at 71,892 to 73,112
_0071
Psest_0072: Psest_0072 - hypothetical protein, at 73,209 to 74,363
_0072
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.894 kb on + strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 70.895 kb on - strand, within Psest_0070 at 71.056 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.098 kb on + strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.099 kb on - strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.152 kb on + strand, within Psest_0070 at 71.153 kb on - strand, within Psest_0070 at 71.267 kb on - strand, within Psest_0070 at 71.267 kb on - strand, within Psest_0070 at 71.404 kb on + strand, within Psest_0070 at 71.404 kb on + strand, within Psest_0070 at 71.405 kb on - strand, within Psest_0070 at 71.405 kb on - strand, within Psest_0070 at 71.560 kb on + strand, within Psest_0070 at 71.561 kb on - strand, within Psest_0070 at 71.561 kb on - strand, within Psest_0070 at 71.561 kb on - strand, within Psest_0070 at 71.561 kb on - strand, within Psest_0070 at 71.561 kb on - strand, within Psest_0070 at 71.578 kb on + strand, within Psest_0070 at 71.579 kb on - strand, within Psest_0070 at 71.579 kb on - strand, within Psest_0070 at 71.579 kb on - strand, within Psest_0070 at 71.579 kb on - strand, within Psest_0070 at 71.662 kb on + strand, within Psest_0070 at 71.662 kb on + strand, within Psest_0070 at 71.662 kb on + strand, within Psest_0070 at 71.663 kb on - strand, within Psest_0070 at 71.663 kb on - strand, within Psest_0070 at 71.719 kb on + strand, within Psest_0070 at 71.848 kb on - strand at 71.982 kb on + strand at 71.982 kb on + strand at 72.097 kb on - strand, within Psest_0071 at 72.103 kb on - strand, within Psest_0071 at 72.180 kb on + strand, within Psest_0071 at 72.181 kb on - strand, within Psest_0071 at 72.181 kb on - strand, within Psest_0071 at 72.181 kb on - strand, within Psest_0071 at 72.211 kb on - strand, within Psest_0071 at 72.559 kb on - strand, within Psest_0071 at 72.559 kb on - strand, within Psest_0071 at 72.615 kb on - strand, within Psest_0071 at 72.648 kb on + strand, within Psest_0071 at 72.684 kb on + strand, within Psest_0071 at 72.684 kb on + strand, within Psest_0071 at 72.684 kb on + strand, within Psest_0071 at 72.684 kb on + strand, within Psest_0071 at 72.685 kb on - strand, within Psest_0071 at 72.685 kb on - strand, within Psest_0071 at 72.685 kb on - strand, within Psest_0071 at 72.685 kb on - strand, within Psest_0071 at 72.685 kb on - strand, within Psest_0071 at 72.693 kb on + strand, within Psest_0071 at 72.694 kb on - strand, within Psest_0071 at 72.804 kb on + strand, within Psest_0071 at 72.822 kb on + strand, within Psest_0071 at 72.823 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.868 kb on - strand, within Psest_0071 at 72.898 kb on - strand, within Psest_0071 at 72.898 kb on - strand, within Psest_0071 at 72.900 kb on + strand, within Psest_0071 at 72.901 kb on - strand, within Psest_0071 at 72.933 kb on + strand, within Psest_0071 at 72.933 kb on + strand, within Psest_0071 at 72.934 kb on - strand, within Psest_0071 at 72.934 kb on - strand, within Psest_0071 at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 72.999 kb on + strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.000 kb on - strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.005 kb on + strand at 73.006 kb on - strand at 73.006 kb on - strand at 73.006 kb on - strand at 73.006 kb on - strand at 73.006 kb on - strand at 73.006 kb on - strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.047 kb on + strand at 73.047 kb on + strand at 73.047 kb on + strand at 73.047 kb on + strand at 73.047 kb on + strand at 73.047 kb on + strand at 73.048 kb on - strand at 73.048 kb on - strand at 73.048 kb on - strand at 73.048 kb on - strand at 73.048 kb on - strand at 73.127 kb on + strand at 73.203 kb on + strand at 73.204 kb on - strand at 73.204 kb on - strand at 73.419 kb on + strand, within Psest_0072 at 73.420 kb on - strand, within Psest_0072 at 73.611 kb on + strand, within Psest_0072 at 73.611 kb on + strand, within Psest_0072 at 73.611 kb on + strand, within Psest_0072 at 73.611 kb on + strand, within Psest_0072 at 73.611 kb on + strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.612 kb on - strand, within Psest_0072 at 73.665 kb on + strand, within Psest_0072 at 73.665 kb on + strand, within Psest_0072 at 73.666 kb on - strand, within Psest_0072 at 73.666 kb on - strand, within Psest_0072 at 73.666 kb on - strand, within Psest_0072 at 73.666 kb on - strand, within Psest_0072 at 73.666 kb on - strand, within Psest_0072 at 73.923 kb on + strand, within Psest_0072 at 73.923 kb on + strand, within Psest_0072 at 73.924 kb on - strand, within Psest_0072 at 73.924 kb on - strand, within Psest_0072 at 73.924 kb on - strand, within Psest_0072 at 73.947 kb on + strand, within Psest_0072 at 73.947 kb on + strand, within Psest_0072 at 73.947 kb on + strand, within Psest_0072 at 73.947 kb on + strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.948 kb on - strand, within Psest_0072 at 73.950 kb on + strand, within Psest_0072 at 73.950 kb on + strand, within Psest_0072 at 73.950 kb on + strand, within Psest_0072 at 73.951 kb on - strand, within Psest_0072
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2A2 remove 70,894 + Psest_0070 0.15 -0.2 70,894 + Psest_0070 0.15 +0.5 70,894 + Psest_0070 0.15 +0.0 70,894 + Psest_0070 0.15 +0.7 70,895 - Psest_0070 0.15 +1.0 70,895 - Psest_0070 0.15 -0.5 70,895 - Psest_0070 0.15 -0.5 70,895 - Psest_0070 0.15 -0.2 71,056 + Psest_0070 0.28 -0.8 71,098 + Psest_0070 0.32 +2.4 71,098 + Psest_0070 0.32 -0.5 71,098 + Psest_0070 0.32 -0.7 71,099 - Psest_0070 0.32 -0.6 71,099 - Psest_0070 0.32 -0.9 71,099 - Psest_0070 0.32 -0.3 71,099 - Psest_0070 0.32 -0.5 71,152 + Psest_0070 0.36 +0.8 71,152 + Psest_0070 0.36 +0.3 71,152 + Psest_0070 0.36 -0.5 71,152 + Psest_0070 0.36 +0.8 71,153 - Psest_0070 0.37 +0.6 71,267 - Psest_0070 0.46 -0.2 71,267 - Psest_0070 0.46 -0.7 71,404 + Psest_0070 0.58 -1.8 71,404 + Psest_0070 0.58 +0.7 71,405 - Psest_0070 0.58 +0.0 71,405 - Psest_0070 0.58 +2.6 71,560 + Psest_0070 0.71 +2.2 71,561 - Psest_0070 0.71 +0.8 71,561 - Psest_0070 0.71 -1.7 71,561 - Psest_0070 0.71 +0.1 71,561 - Psest_0070 0.71 -3.3 71,561 - Psest_0070 0.71 +0.7 71,578 + Psest_0070 0.72 +1.2 71,579 - Psest_0070 0.72 +1.2 71,579 - Psest_0070 0.72 +0.0 71,579 - Psest_0070 0.72 -2.1 71,579 - Psest_0070 0.72 +0.8 71,662 + Psest_0070 0.79 +3.1 71,662 + Psest_0070 0.79 +3.0 71,662 + Psest_0070 0.79 -0.1 71,663 - Psest_0070 0.80 -1.0 71,663 - Psest_0070 0.80 +0.5 71,719 + Psest_0070 0.84 +1.0 71,848 - +2.6 71,982 + -2.5 71,982 + -0.6 72,097 - Psest_0071 0.17 -0.2 72,103 - Psest_0071 0.17 +0.6 72,180 + Psest_0071 0.24 +2.7 72,181 - Psest_0071 0.24 -0.9 72,181 - Psest_0071 0.24 -2.2 72,181 - Psest_0071 0.24 -1.2 72,211 - Psest_0071 0.26 +1.1 72,559 - Psest_0071 0.55 -1.2 72,559 - Psest_0071 0.55 +2.7 72,615 - Psest_0071 0.59 -1.7 72,648 + Psest_0071 0.62 +0.1 72,684 + Psest_0071 0.65 -0.8 72,684 + Psest_0071 0.65 -1.7 72,684 + Psest_0071 0.65 -0.3 72,684 + Psest_0071 0.65 +0.9 72,685 - Psest_0071 0.65 -1.2 72,685 - Psest_0071 0.65 -0.9 72,685 - Psest_0071 0.65 -0.1 72,685 - Psest_0071 0.65 +1.6 72,685 - Psest_0071 0.65 -0.7 72,693 + Psest_0071 0.66 +0.4 72,694 - Psest_0071 0.66 -1.1 72,804 + Psest_0071 0.75 +0.9 72,822 + Psest_0071 0.76 -0.5 72,823 - Psest_0071 0.76 +3.1 72,868 - Psest_0071 0.80 +0.1 72,868 - Psest_0071 0.80 -0.0 72,868 - Psest_0071 0.80 -0.2 72,868 - Psest_0071 0.80 +0.4 72,868 - Psest_0071 0.80 +0.3 72,868 - Psest_0071 0.80 -0.1 72,898 - Psest_0071 0.82 -2.6 72,898 - Psest_0071 0.82 +1.8 72,900 + Psest_0071 0.83 +1.2 72,901 - Psest_0071 0.83 +1.2 72,933 + Psest_0071 0.85 +0.4 72,933 + Psest_0071 0.85 +1.4 72,934 - Psest_0071 0.85 +3.4 72,934 - Psest_0071 0.85 -2.1 72,999 + +0.4 72,999 + -0.8 72,999 + -0.8 72,999 + -0.1 72,999 + +0.1 72,999 + +2.3 72,999 + -1.8 72,999 + +0.8 72,999 + +0.1 72,999 + -1.5 73,000 - -0.5 73,000 - +0.0 73,000 - -0.6 73,000 - -0.7 73,000 - +0.8 73,000 - +0.0 73,000 - -1.0 73,000 - -1.0 73,000 - +0.3 73,000 - -2.3 73,000 - +1.1 73,005 + +4.6 73,005 + -1.0 73,005 + +0.2 73,005 + +2.2 73,005 + +0.0 73,005 + +2.1 73,005 + -0.2 73,005 + +3.4 73,006 - -0.1 73,006 - -0.5 73,006 - +0.9 73,006 - +1.6 73,006 - +2.3 73,006 - +0.3 73,008 + +0.3 73,008 + +1.3 73,008 + +0.8 73,008 + -1.2 73,008 + -2.6 73,009 - +3.5 73,009 - -0.8 73,009 - -0.8 73,009 - +0.6 73,009 - -0.7 73,009 - -2.7 73,009 - -0.5 73,009 - -0.8 73,047 + -0.8 73,047 + -0.3 73,047 + -1.1 73,047 + -0.5 73,047 + +2.4 73,047 + +1.3 73,048 - -3.7 73,048 - -0.2 73,048 - +0.5 73,048 - -0.8 73,048 - -0.2 73,127 + +1.1 73,203 + -1.2 73,204 - +2.5 73,204 - +2.4 73,419 + Psest_0072 0.18 -2.2 73,420 - Psest_0072 0.18 -0.7 73,611 + Psest_0072 0.35 -0.4 73,611 + Psest_0072 0.35 +1.2 73,611 + Psest_0072 0.35 -1.0 73,611 + Psest_0072 0.35 +1.3 73,611 + Psest_0072 0.35 +0.6 73,612 - Psest_0072 0.35 -2.2 73,612 - Psest_0072 0.35 +0.7 73,612 - Psest_0072 0.35 -0.1 73,612 - Psest_0072 0.35 -0.2 73,612 - Psest_0072 0.35 -0.2 73,612 - Psest_0072 0.35 -0.3 73,665 + Psest_0072 0.39 -0.9 73,665 + Psest_0072 0.39 -2.7 73,666 - Psest_0072 0.40 -0.7 73,666 - Psest_0072 0.40 +0.2 73,666 - Psest_0072 0.40 -0.1 73,666 - Psest_0072 0.40 -1.4 73,666 - Psest_0072 0.40 -0.2 73,923 + Psest_0072 0.62 -1.0 73,923 + Psest_0072 0.62 -0.1 73,924 - Psest_0072 0.62 +0.0 73,924 - Psest_0072 0.62 -2.9 73,924 - Psest_0072 0.62 +0.9 73,947 + Psest_0072 0.64 +2.1 73,947 + Psest_0072 0.64 +1.3 73,947 + Psest_0072 0.64 +1.0 73,947 + Psest_0072 0.64 -0.2 73,948 - Psest_0072 0.64 -0.1 73,948 - Psest_0072 0.64 -2.6 73,948 - Psest_0072 0.64 +0.2 73,948 - Psest_0072 0.64 -0.4 73,948 - Psest_0072 0.64 -0.3 73,948 - Psest_0072 0.64 -0.3 73,948 - Psest_0072 0.64 +0.9 73,950 + Psest_0072 0.64 -0.7 73,950 + Psest_0072 0.64 -0.9 73,950 + Psest_0072 0.64 +1.0 73,951 - Psest_0072 0.64 +1.5
Or see this region's nucleotide sequence