Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1202

Experiment: RCH2 grown on a colony of N2A2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1200 and Psest_1201 are separated by 280 nucleotidesPsest_1201 and Psest_1202 are separated by 200 nucleotidesPsest_1202 and Psest_1203 are separated by 80 nucleotides Psest_1200: Psest_1200 - putative urate catabolism protein, at 1,303,240 to 1,304,172 _1200 Psest_1201: Psest_1201 - hydroxyisourate hydrolase, at 1,304,453 to 1,304,806 _1201 Psest_1202: Psest_1202 - Putative threonine efflux protein, at 1,305,007 to 1,305,633 _1202 Psest_1203: Psest_1203 - Permeases, at 1,305,714 to 1,307,060 _1203 Position (kb) 1305 1306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1304.069 kb on + strand, within Psest_1200at 1304.070 kb on - strand, within Psest_1200at 1304.159 kb on + strandat 1304.188 kb on - strandat 1304.249 kb on + strandat 1304.262 kb on - strandat 1304.270 kb on + strandat 1304.271 kb on - strandat 1304.321 kb on + strandat 1304.476 kb on - strandat 1304.476 kb on - strandat 1304.526 kb on - strand, within Psest_1201at 1304.618 kb on + strand, within Psest_1201at 1304.633 kb on + strand, within Psest_1201at 1304.634 kb on - strand, within Psest_1201at 1304.660 kb on + strand, within Psest_1201at 1304.661 kb on - strand, within Psest_1201at 1304.668 kb on + strand, within Psest_1201at 1304.668 kb on + strand, within Psest_1201at 1304.750 kb on + strand, within Psest_1201at 1304.751 kb on - strand, within Psest_1201at 1304.751 kb on - strand, within Psest_1201at 1304.751 kb on - strand, within Psest_1201at 1304.783 kb on + strandat 1304.783 kb on + strandat 1304.784 kb on - strandat 1304.784 kb on - strandat 1304.831 kb on + strandat 1304.831 kb on + strandat 1304.869 kb on + strandat 1304.870 kb on - strandat 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.073 kb on + strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.074 kb on - strand, within Psest_1202at 1305.129 kb on - strand, within Psest_1202at 1305.268 kb on + strand, within Psest_1202at 1305.269 kb on - strand, within Psest_1202at 1305.269 kb on - strand, within Psest_1202at 1305.269 kb on - strand, within Psest_1202at 1305.269 kb on - strand, within Psest_1202at 1305.269 kb on - strand, within Psest_1202at 1305.380 kb on + strand, within Psest_1202at 1305.380 kb on + strand, within Psest_1202at 1305.381 kb on - strand, within Psest_1202at 1305.381 kb on - strand, within Psest_1202at 1305.381 kb on - strand, within Psest_1202at 1305.381 kb on - strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.389 kb on + strand, within Psest_1202at 1305.390 kb on - strand, within Psest_1202at 1305.527 kb on - strand, within Psest_1202at 1305.533 kb on + strand, within Psest_1202at 1305.533 kb on + strand, within Psest_1202at 1305.534 kb on - strand, within Psest_1202at 1305.650 kb on + strandat 1305.757 kb on + strandat 1305.757 kb on + strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.758 kb on - strandat 1305.811 kb on + strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.812 kb on - strandat 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.952 kb on + strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.953 kb on - strand, within Psest_1203at 1305.976 kb on + strand, within Psest_1203at 1305.976 kb on + strand, within Psest_1203at 1306.096 kb on + strand, within Psest_1203at 1306.096 kb on + strand, within Psest_1203at 1306.096 kb on + strand, within Psest_1203at 1306.096 kb on + strand, within Psest_1203at 1306.097 kb on - strand, within Psest_1203at 1306.097 kb on - strand, within Psest_1203at 1306.295 kb on + strand, within Psest_1203at 1306.366 kb on + strand, within Psest_1203at 1306.367 kb on - strand, within Psest_1203at 1306.434 kb on + strand, within Psest_1203at 1306.434 kb on + strand, within Psest_1203at 1306.435 kb on - strand, within Psest_1203at 1306.435 kb on - strand, within Psest_1203at 1306.435 kb on - strand, within Psest_1203

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of N2A2
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1,304,069 + Psest_1200 0.89 -2.3
1,304,070 - Psest_1200 0.89 -0.6
1,304,159 + -0.6
1,304,188 - -0.4
1,304,249 + -2.3
1,304,262 - +0.7
1,304,270 + -2.0
1,304,271 - +0.5
1,304,321 + -2.3
1,304,476 - -0.4
1,304,476 - -0.9
1,304,526 - Psest_1201 0.21 -1.9
1,304,618 + Psest_1201 0.47 -1.5
1,304,633 + Psest_1201 0.51 -2.2
1,304,634 - Psest_1201 0.51 +0.8
1,304,660 + Psest_1201 0.58 -1.9
1,304,661 - Psest_1201 0.59 +3.1
1,304,668 + Psest_1201 0.61 -2.7
1,304,668 + Psest_1201 0.61 -0.0
1,304,750 + Psest_1201 0.84 +0.2
1,304,751 - Psest_1201 0.84 -1.7
1,304,751 - Psest_1201 0.84 +0.3
1,304,751 - Psest_1201 0.84 -2.4
1,304,783 + -1.4
1,304,783 + -0.0
1,304,784 - +0.1
1,304,784 - +0.5
1,304,831 + -1.0
1,304,831 + -0.3
1,304,869 + -1.9
1,304,870 - -3.0
1,305,073 + Psest_1202 0.11 +0.6
1,305,073 + Psest_1202 0.11 +0.1
1,305,073 + Psest_1202 0.11 +0.1
1,305,073 + Psest_1202 0.11 -4.0
1,305,073 + Psest_1202 0.11 -0.1
1,305,073 + Psest_1202 0.11 +1.7
1,305,073 + Psest_1202 0.11 +0.2
1,305,073 + Psest_1202 0.11 -0.3
1,305,073 + Psest_1202 0.11 +2.1
1,305,073 + Psest_1202 0.11 -0.4
1,305,073 + Psest_1202 0.11 -2.2
1,305,073 + Psest_1202 0.11 +0.7
1,305,073 + Psest_1202 0.11 -1.1
1,305,073 + Psest_1202 0.11 +0.1
1,305,073 + Psest_1202 0.11 -0.2
1,305,073 + Psest_1202 0.11 +0.4
1,305,073 + Psest_1202 0.11 -0.8
1,305,073 + Psest_1202 0.11 -3.5
1,305,073 + Psest_1202 0.11 +0.6
1,305,073 + Psest_1202 0.11 -0.7
1,305,073 + Psest_1202 0.11 -0.8
1,305,074 - Psest_1202 0.11 +0.4
1,305,074 - Psest_1202 0.11 -1.7
1,305,074 - Psest_1202 0.11 +0.7
1,305,074 - Psest_1202 0.11 -0.9
1,305,074 - Psest_1202 0.11 -1.6
1,305,074 - Psest_1202 0.11 -0.0
1,305,074 - Psest_1202 0.11 -0.3
1,305,074 - Psest_1202 0.11 +0.2
1,305,074 - Psest_1202 0.11 +0.0
1,305,074 - Psest_1202 0.11 -0.3
1,305,074 - Psest_1202 0.11 +1.6
1,305,074 - Psest_1202 0.11 -0.3
1,305,074 - Psest_1202 0.11 +1.5
1,305,074 - Psest_1202 0.11 +5.0
1,305,074 - Psest_1202 0.11 -0.6
1,305,074 - Psest_1202 0.11 -1.1
1,305,074 - Psest_1202 0.11 -2.1
1,305,074 - Psest_1202 0.11 -2.5
1,305,074 - Psest_1202 0.11 +0.8
1,305,074 - Psest_1202 0.11 +0.1
1,305,074 - Psest_1202 0.11 +0.2
1,305,074 - Psest_1202 0.11 +0.4
1,305,074 - Psest_1202 0.11 +0.5
1,305,074 - Psest_1202 0.11 -2.5
1,305,074 - Psest_1202 0.11 +2.0
1,305,074 - Psest_1202 0.11 +1.7
1,305,074 - Psest_1202 0.11 -1.1
1,305,074 - Psest_1202 0.11 -0.6
1,305,129 - Psest_1202 0.19 +0.9
1,305,268 + Psest_1202 0.42 -1.1
1,305,269 - Psest_1202 0.42 -1.0
1,305,269 - Psest_1202 0.42 -1.0
1,305,269 - Psest_1202 0.42 +2.6
1,305,269 - Psest_1202 0.42 -1.8
1,305,269 - Psest_1202 0.42 -2.4
1,305,380 + Psest_1202 0.59 -1.2
1,305,380 + Psest_1202 0.59 -1.0
1,305,381 - Psest_1202 0.60 +3.1
1,305,381 - Psest_1202 0.60 -2.0
1,305,381 - Psest_1202 0.60 -1.3
1,305,381 - Psest_1202 0.60 +0.5
1,305,389 + Psest_1202 0.61 -1.0
1,305,389 + Psest_1202 0.61 +0.6
1,305,389 + Psest_1202 0.61 -1.8
1,305,389 + Psest_1202 0.61 +0.6
1,305,389 + Psest_1202 0.61 -1.1
1,305,389 + Psest_1202 0.61 -3.1
1,305,389 + Psest_1202 0.61 -0.8
1,305,389 + Psest_1202 0.61 -0.9
1,305,390 - Psest_1202 0.61 -0.8
1,305,527 - Psest_1202 0.83 -0.9
1,305,533 + Psest_1202 0.84 -2.3
1,305,533 + Psest_1202 0.84 +1.2
1,305,534 - Psest_1202 0.84 -1.9
1,305,650 + +0.1
1,305,757 + +0.0
1,305,757 + -1.7
1,305,758 - -0.9
1,305,758 - -0.2
1,305,758 - -0.3
1,305,758 - +0.1
1,305,758 - +1.1
1,305,758 - -0.6
1,305,758 - +0.2
1,305,758 - -0.9
1,305,758 - -0.6
1,305,758 - -0.7
1,305,758 - -2.3
1,305,758 - +1.4
1,305,811 + -0.9
1,305,812 - +3.1
1,305,812 - -0.8
1,305,812 - -0.6
1,305,812 - -0.7
1,305,812 - -0.2
1,305,812 - -1.3
1,305,812 - +5.2
1,305,952 + Psest_1203 0.18 +1.6
1,305,952 + Psest_1203 0.18 -1.4
1,305,952 + Psest_1203 0.18 +1.4
1,305,952 + Psest_1203 0.18 -0.9
1,305,952 + Psest_1203 0.18 +0.0
1,305,952 + Psest_1203 0.18 +0.1
1,305,952 + Psest_1203 0.18 +5.2
1,305,952 + Psest_1203 0.18 +2.7
1,305,952 + Psest_1203 0.18 -0.9
1,305,952 + Psest_1203 0.18 -1.7
1,305,952 + Psest_1203 0.18 -1.4
1,305,952 + Psest_1203 0.18 -1.5
1,305,952 + Psest_1203 0.18 +1.4
1,305,952 + Psest_1203 0.18 -0.3
1,305,953 - Psest_1203 0.18 -0.0
1,305,953 - Psest_1203 0.18 +1.5
1,305,953 - Psest_1203 0.18 +0.1
1,305,953 - Psest_1203 0.18 -1.1
1,305,953 - Psest_1203 0.18 -0.4
1,305,953 - Psest_1203 0.18 +0.6
1,305,953 - Psest_1203 0.18 +0.1
1,305,953 - Psest_1203 0.18 +0.5
1,305,953 - Psest_1203 0.18 +0.0
1,305,953 - Psest_1203 0.18 +1.5
1,305,953 - Psest_1203 0.18 -1.1
1,305,953 - Psest_1203 0.18 +0.1
1,305,976 + Psest_1203 0.19 -1.5
1,305,976 + Psest_1203 0.19 -0.7
1,306,096 + Psest_1203 0.28 -0.9
1,306,096 + Psest_1203 0.28 -0.1
1,306,096 + Psest_1203 0.28 +0.2
1,306,096 + Psest_1203 0.28 +0.5
1,306,097 - Psest_1203 0.28 +1.9
1,306,097 - Psest_1203 0.28 -0.8
1,306,295 + Psest_1203 0.43 +2.5
1,306,366 + Psest_1203 0.48 +0.8
1,306,367 - Psest_1203 0.48 +2.5
1,306,434 + Psest_1203 0.53 -0.8
1,306,434 + Psest_1203 0.53 +0.7
1,306,435 - Psest_1203 0.54 +2.9
1,306,435 - Psest_1203 0.54 -0.8
1,306,435 - Psest_1203 0.54 -0.6

Or see this region's nucleotide sequence