Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0787 and Psest_0788 overlap by 17 nucleotides Psest_0788 and Psest_0789 are separated by 216 nucleotides Psest_0789 and Psest_0790 are separated by 68 nucleotides
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164
_0788
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243
_0790
Position (kb) 861
862
863 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.802 kb on + strand at 860.958 kb on + strand, within Psest_0787 at 861.057 kb on + strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.180 kb on + strand, within Psest_0787 at 861.352 kb on - strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.699 kb on + strand at 861.699 kb on + strand at 861.699 kb on + strand at 861.700 kb on - strand at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 862.142 kb on + strand at 862.153 kb on - strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.220 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.230 kb on - strand at 862.230 kb on - strand at 862.247 kb on - strand at 862.248 kb on + strand at 862.249 kb on - strand at 862.337 kb on - strand at 862.431 kb on + strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.619 kb on - strand, within Psest_0789 at 862.625 kb on + strand, within Psest_0789 at 862.626 kb on - strand, within Psest_0789 at 862.810 kb on - strand at 862.989 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.084 kb on - strand, within Psest_0790
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 860,766 + -2.2 860,766 + -0.8 860,766 + -1.2 860,766 + -0.3 860,766 + +1.9 860,766 + +0.9 860,767 - +1.6 860,767 - +0.8 860,767 - +0.6 860,767 - -0.1 860,767 - +0.8 860,767 - +1.7 860,767 - -0.7 860,767 - -0.1 860,767 - +0.1 860,767 - +1.0 860,802 + -3.1 860,958 + Psest_0787 0.20 +1.2 861,057 + Psest_0787 0.29 -0.1 861,058 - Psest_0787 0.30 -1.0 861,058 - Psest_0787 0.30 +2.5 861,058 - Psest_0787 0.30 +3.2 861,058 - Psest_0787 0.30 -0.5 861,180 + Psest_0787 0.42 -1.5 861,352 - Psest_0787 0.59 +1.3 861,438 + Psest_0787 0.68 -0.0 861,438 + Psest_0787 0.68 +2.5 861,438 + Psest_0787 0.68 +1.9 861,439 - Psest_0787 0.68 +0.8 861,439 - Psest_0787 0.68 +4.0 861,439 - Psest_0787 0.68 -1.5 861,439 - Psest_0787 0.68 -2.2 861,439 - Psest_0787 0.68 -0.0 861,439 - Psest_0787 0.68 +1.0 861,439 - Psest_0787 0.68 -0.4 861,471 + Psest_0787 0.71 -1.3 861,471 + Psest_0787 0.71 +0.3 861,472 - Psest_0787 0.71 -2.2 861,472 - Psest_0787 0.71 -0.6 861,472 - Psest_0787 0.71 -1.9 861,472 - Psest_0787 0.71 +1.6 861,472 - Psest_0787 0.71 +2.2 861,472 - Psest_0787 0.71 +0.6 861,472 - Psest_0787 0.71 -3.0 861,472 - Psest_0787 0.71 -2.2 861,472 - Psest_0787 0.71 +0.7 861,644 + Psest_0787 0.88 -2.4 861,644 + Psest_0787 0.88 +0.4 861,644 + Psest_0787 0.88 +2.7 861,644 + Psest_0787 0.88 +0.5 861,645 - Psest_0787 0.88 -0.5 861,645 - Psest_0787 0.88 -1.5 861,699 + +2.0 861,699 + -0.1 861,699 + +0.9 861,700 - -3.4 861,788 + Psest_0788 0.10 +0.9 861,788 + Psest_0788 0.10 -0.5 861,788 + Psest_0788 0.10 +1.0 861,788 + Psest_0788 0.10 +0.4 861,789 - Psest_0788 0.10 +0.3 861,789 - Psest_0788 0.10 -1.8 861,789 - Psest_0788 0.10 -3.1 861,789 - Psest_0788 0.10 -0.9 861,884 + Psest_0788 0.33 -2.5 861,884 + Psest_0788 0.33 -2.3 861,884 + Psest_0788 0.33 -1.6 861,884 + Psest_0788 0.33 +3.6 861,885 - Psest_0788 0.33 -1.8 861,885 - Psest_0788 0.33 -0.6 861,886 + Psest_0788 0.34 -2.4 861,886 + Psest_0788 0.34 -3.1 861,886 + Psest_0788 0.34 -0.4 861,886 + Psest_0788 0.34 +0.4 861,886 + Psest_0788 0.34 +1.0 861,886 + Psest_0788 0.34 -0.8 861,886 + Psest_0788 0.34 -0.2 861,886 + Psest_0788 0.34 -0.3 861,886 + Psest_0788 0.34 -2.8 861,886 + Psest_0788 0.34 +2.9 861,887 - Psest_0788 0.34 -0.7 861,887 - Psest_0788 0.34 -1.1 861,887 - Psest_0788 0.34 -2.9 861,887 - Psest_0788 0.34 +0.6 861,887 - Psest_0788 0.34 +1.5 861,887 - Psest_0788 0.34 -0.9 861,887 - Psest_0788 0.34 +0.1 861,887 - Psest_0788 0.34 +0.1 861,887 - Psest_0788 0.34 +3.7 861,887 - Psest_0788 0.34 +1.3 861,887 - Psest_0788 0.34 +0.4 861,887 - Psest_0788 0.34 +2.7 861,887 - Psest_0788 0.34 -3.2 862,142 + +0.2 862,153 - +1.7 862,198 + -0.5 862,198 + +2.7 862,198 + +2.5 862,198 + -1.2 862,198 + -0.4 862,198 + -0.1 862,198 + +0.7 862,198 + +1.6 862,199 - +0.2 862,199 - +1.3 862,199 - -0.9 862,199 - -2.5 862,199 - +1.3 862,199 - -0.4 862,199 - -2.5 862,199 - -0.5 862,199 - +1.9 862,199 - +0.3 862,199 - +0.7 862,220 + +0.3 862,227 + +0.7 862,227 + +0.1 862,227 + +1.6 862,227 + +1.7 862,227 + -0.2 862,227 + +1.5 862,227 + -0.7 862,227 + -2.7 862,227 + -1.7 862,227 + -1.6 862,227 + +1.7 862,227 + +0.5 862,227 + +2.2 862,227 + -0.5 862,227 + +2.0 862,227 + +2.3 862,227 + -1.8 862,227 + +0.3 862,228 - -0.9 862,228 - -0.1 862,228 - -1.8 862,228 - -1.9 862,228 - -2.9 862,228 - -1.6 862,228 - -1.7 862,228 - -0.7 862,228 - -2.9 862,228 - +1.0 862,230 - -2.7 862,230 - +0.1 862,247 - -0.7 862,248 + -2.3 862,249 - -0.9 862,337 - +2.5 862,431 + Psest_0789 0.14 +0.0 862,432 - Psest_0789 0.14 -1.9 862,432 - Psest_0789 0.14 -0.9 862,618 + Psest_0789 0.67 +0.9 862,618 + Psest_0789 0.67 -2.4 862,618 + Psest_0789 0.67 +0.4 862,618 + Psest_0789 0.67 -0.2 862,618 + Psest_0789 0.67 -1.3 862,618 + Psest_0789 0.67 -2.2 862,619 - Psest_0789 0.67 +2.0 862,625 + Psest_0789 0.69 -0.9 862,626 - Psest_0789 0.69 -2.3 862,810 - +1.3 862,989 + Psest_0790 0.42 +1.2 863,083 + Psest_0790 0.63 -4.0 863,083 + Psest_0790 0.63 +1.6 863,084 - Psest_0790 0.64 +2.8
Or see this region's nucleotide sequence