Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0757 and Psest_0758 are separated by 114 nucleotides Psest_0758 and Psest_0759 are separated by 60 nucleotides Psest_0759 and Psest_0760 are separated by 294 nucleotides Psest_0760 and Psest_0761 are separated by 25 nucleotides
Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167
_0757
Psest_0758: Psest_0758 - Lactoylglutathione lyase and related lyases, at 828,282 to 828,671
_0758
Psest_0759: Psest_0759 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)., at 828,732 to 829,478
_0759
Psest_0760: Psest_0760 - Polyketide cyclase / dehydrase and lipid transport., at 829,773 to 830,168
_0760
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 827.840 kb on - strand, within Psest_0757 at 827.852 kb on - strand, within Psest_0757 at 827.912 kb on + strand, within Psest_0757 at 828.016 kb on - strand, within Psest_0757 at 828.094 kb on + strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.355 kb on + strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.663 kb on + strand at 828.663 kb on + strand at 828.663 kb on + strand at 828.664 kb on - strand at 828.664 kb on - strand at 828.693 kb on - strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.766 kb on - strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.779 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.791 kb on - strand at 828.943 kb on + strand, within Psest_0759 at 829.042 kb on - strand, within Psest_0759 at 829.400 kb on + strand, within Psest_0759 at 829.600 kb on + strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.791 kb on - strand at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.856 kb on - strand, within Psest_0760 at 830.088 kb on - strand, within Psest_0760 at 830.272 kb on + strand at 830.272 kb on + strand at 830.272 kb on + strand at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 827,840 - Psest_0757 0.31 +0.5 827,852 - Psest_0757 0.33 -0.2 827,912 + Psest_0757 0.46 +1.5 828,016 - Psest_0757 0.68 +2.7 828,094 + Psest_0757 0.84 -1.6 828,095 - Psest_0757 0.85 +2.6 828,095 - Psest_0757 0.85 +2.6 828,095 - Psest_0757 0.85 -2.1 828,095 - Psest_0757 0.85 +1.8 828,355 + Psest_0758 0.19 +0.1 828,356 - Psest_0758 0.19 -0.4 828,356 - Psest_0758 0.19 +1.3 828,356 - Psest_0758 0.19 -1.7 828,547 + Psest_0758 0.68 -3.1 828,547 + Psest_0758 0.68 -0.0 828,548 - Psest_0758 0.68 +3.3 828,548 - Psest_0758 0.68 +0.1 828,548 - Psest_0758 0.68 -1.5 828,548 - Psest_0758 0.68 +0.9 828,607 + Psest_0758 0.83 -2.9 828,607 + Psest_0758 0.83 +0.5 828,607 + Psest_0758 0.83 -1.0 828,607 + Psest_0758 0.83 +0.8 828,608 - Psest_0758 0.84 -1.4 828,608 - Psest_0758 0.84 -1.3 828,608 - Psest_0758 0.84 +0.5 828,608 - Psest_0758 0.84 +1.7 828,608 - Psest_0758 0.84 +2.2 828,608 - Psest_0758 0.84 -1.5 828,629 - Psest_0758 0.89 -1.9 828,629 - Psest_0758 0.89 +1.3 828,629 - Psest_0758 0.89 +0.8 828,663 + -0.7 828,663 + -1.1 828,663 + -1.1 828,664 - +0.9 828,664 - -0.9 828,693 - -2.6 828,765 + +0.7 828,765 + +1.6 828,765 + -0.3 828,765 + +1.0 828,765 + +0.9 828,765 + +1.1 828,766 - +1.3 828,769 + -0.0 828,769 + -3.1 828,769 + +0.8 828,769 + -0.2 828,770 - -0.0 828,770 - -0.4 828,770 - -0.2 828,779 + -2.5 828,781 + -0.9 828,781 + +0.4 828,781 + -2.3 828,781 + +0.4 828,781 + -1.6 828,781 + +1.9 828,781 + -2.0 828,781 + -1.3 828,781 + -0.7 828,781 + +1.0 828,781 + +1.7 828,781 + +1.2 828,781 + +1.1 828,781 + +1.7 828,781 + +0.7 828,781 + +0.7 828,781 + -0.6 828,781 + +2.7 828,782 - -0.1 828,782 - -1.1 828,782 - -2.3 828,782 - +0.2 828,782 - -0.5 828,791 - -2.3 828,943 + Psest_0759 0.28 +1.9 829,042 - Psest_0759 0.41 -0.5 829,400 + Psest_0759 0.89 -0.9 829,600 + -0.7 829,601 - -1.4 829,601 - -0.9 829,601 - +1.4 829,725 + +0.5 829,725 + -1.9 829,725 + +1.7 829,725 + +2.6 829,725 + -1.9 829,725 + -0.7 829,725 + +0.2 829,725 + -0.9 829,725 + +0.2 829,725 + +2.1 829,725 + +1.9 829,726 - +0.9 829,726 - -0.7 829,726 - -0.6 829,726 - -1.8 829,726 - +2.2 829,791 - -0.5 829,827 + Psest_0760 0.14 +5.4 829,827 + Psest_0760 0.14 +2.5 829,827 + Psest_0760 0.14 -0.7 829,827 + Psest_0760 0.14 +0.6 829,828 - Psest_0760 0.14 -1.7 829,828 - Psest_0760 0.14 +1.8 829,828 - Psest_0760 0.14 +1.2 829,828 - Psest_0760 0.14 +1.5 829,828 - Psest_0760 0.14 +2.2 829,856 - Psest_0760 0.21 +1.4 830,088 - Psest_0760 0.80 -1.5 830,272 + +2.0 830,272 + -1.0 830,272 + -1.9 830,347 - Psest_0761 0.14 +0.2 830,353 + Psest_0761 0.14 +1.0 830,387 + Psest_0761 0.17 -2.5 830,387 + Psest_0761 0.17 +0.6 830,388 - Psest_0761 0.17 +2.2 830,388 - Psest_0761 0.17 -2.6 830,388 - Psest_0761 0.17 -2.3 830,388 - Psest_0761 0.17 +2.2 830,388 - Psest_0761 0.17 +1.3 830,388 - Psest_0761 0.17 -0.1
Or see this region's nucleotide sequence