Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0734 and Psest_0735 are separated by 248 nucleotides Psest_0735 and Psest_0736 are separated by 49 nucleotides Psest_0736 and Psest_0737 are separated by 189 nucleotides Psest_0737 and Psest_0738 are separated by 13 nucleotides
Psest_0734: Psest_0734 - RND family efflux transporter, MFP subunit, at 806,298 to 807,377
_0734
Psest_0735: Psest_0735 - bacterioferritin, at 807,626 to 808,093
_0735
Psest_0736: Psest_0736 - Methyl-accepting chemotaxis protein, at 808,143 to 810,065
_0736
Psest_0737: Psest_0737 - Cu(I)-responsive transcriptional regulator, at 810,255 to 810,698
_0737
Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090
_0738
Position (kb) 808
809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 807.436 kb on + strand at 807.436 kb on + strand at 807.437 kb on - strand at 807.437 kb on - strand at 807.437 kb on - strand at 807.595 kb on + strand at 807.595 kb on + strand at 807.621 kb on - strand at 807.654 kb on - strand at 807.699 kb on - strand, within Psest_0735 at 807.699 kb on - strand, within Psest_0735 at 807.719 kb on + strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.720 kb on - strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.746 kb on + strand, within Psest_0735 at 807.747 kb on - strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.798 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.905 kb on + strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 807.906 kb on - strand, within Psest_0735 at 808.020 kb on - strand, within Psest_0735 at 808.070 kb on + strand at 808.071 kb on - strand at 808.113 kb on + strand at 808.113 kb on + strand at 808.113 kb on + strand at 808.113 kb on + strand at 808.430 kb on + strand, within Psest_0736 at 808.430 kb on + strand, within Psest_0736 at 808.430 kb on + strand, within Psest_0736 at 808.431 kb on - strand, within Psest_0736 at 809.112 kb on - strand, within Psest_0736 at 809.356 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.461 kb on + strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.462 kb on - strand, within Psest_0736 at 809.498 kb on + strand, within Psest_0736 at 809.498 kb on + strand, within Psest_0736 at 809.499 kb on - strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.500 kb on + strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand, within Psest_0736 at 809.501 kb on - strand at 809.501 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.516 kb on - strand, within Psest_0736 at 809.584 kb on + strand, within Psest_0736 at 809.585 kb on - strand, within Psest_0736 at 809.585 kb on - strand, within Psest_0736 at 809.686 kb on + strand, within Psest_0736 at 809.686 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.060 kb on - strand at 810.060 kb on - strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.152 kb on - strand at 810.165 kb on + strand at 810.165 kb on + strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.641 kb on - strand, within Psest_0737 at 810.757 kb on + strand at 810.845 kb on + strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 807,436 + -3.5 807,436 + -1.7 807,437 - -0.9 807,437 - -1.4 807,437 - -1.8 807,595 + -1.1 807,595 + +2.5 807,621 - +0.4 807,654 - +2.6 807,699 - Psest_0735 0.16 +0.0 807,699 - Psest_0735 0.16 -2.4 807,719 + Psest_0735 0.20 -2.1 807,720 - Psest_0735 0.20 +0.1 807,720 - Psest_0735 0.20 -1.8 807,720 - Psest_0735 0.20 -1.3 807,746 + Psest_0735 0.26 +0.5 807,746 + Psest_0735 0.26 -1.6 807,746 + Psest_0735 0.26 +0.9 807,746 + Psest_0735 0.26 +2.4 807,747 - Psest_0735 0.26 -1.0 807,798 + Psest_0735 0.37 -1.1 807,798 + Psest_0735 0.37 +1.1 807,798 + Psest_0735 0.37 +1.9 807,905 + Psest_0735 0.60 +2.1 807,905 + Psest_0735 0.60 +1.2 807,905 + Psest_0735 0.60 -0.8 807,906 - Psest_0735 0.60 -0.1 807,906 - Psest_0735 0.60 +2.7 807,906 - Psest_0735 0.60 -2.2 807,906 - Psest_0735 0.60 -1.1 808,020 - Psest_0735 0.84 -0.4 808,070 + -0.4 808,071 - -1.4 808,113 + -1.2 808,113 + -1.1 808,113 + -0.7 808,113 + +1.1 808,430 + Psest_0736 0.15 -1.3 808,430 + Psest_0736 0.15 +0.5 808,430 + Psest_0736 0.15 -0.1 808,431 - Psest_0736 0.15 +2.1 809,112 - Psest_0736 0.50 -0.3 809,356 + Psest_0736 0.63 +2.4 809,461 + Psest_0736 0.69 +3.5 809,461 + Psest_0736 0.69 -0.7 809,461 + Psest_0736 0.69 +1.1 809,461 + Psest_0736 0.69 +2.1 809,461 + Psest_0736 0.69 -0.7 809,461 + Psest_0736 0.69 +0.2 809,461 + Psest_0736 0.69 +0.6 809,461 + Psest_0736 0.69 +1.8 809,461 + Psest_0736 0.69 +0.5 809,462 - Psest_0736 0.69 +2.0 809,462 - Psest_0736 0.69 -1.9 809,462 - Psest_0736 0.69 +1.3 809,462 - Psest_0736 0.69 +2.2 809,462 - Psest_0736 0.69 +0.9 809,462 - Psest_0736 0.69 -1.3 809,498 + Psest_0736 0.70 +1.9 809,498 + Psest_0736 0.70 +2.7 809,499 - Psest_0736 0.71 -0.4 809,500 + Psest_0736 0.71 -3.1 809,500 + Psest_0736 0.71 -0.9 809,500 + Psest_0736 0.71 -0.6 809,501 - Psest_0736 0.71 +3.1 809,501 - Psest_0736 0.71 +1.4 809,501 - Psest_0736 0.71 -2.4 809,501 - Psest_0736 0.71 +2.4 809,501 - +0.7 809,501 - Psest_0736 0.71 +2.8 809,516 - Psest_0736 0.71 +0.9 809,516 - Psest_0736 0.71 +0.3 809,516 - Psest_0736 0.71 +3.7 809,584 + Psest_0736 0.75 -1.1 809,585 - Psest_0736 0.75 -1.1 809,585 - Psest_0736 0.75 +0.8 809,686 + Psest_0736 0.80 +1.1 809,686 + Psest_0736 0.80 -0.7 809,809 + Psest_0736 0.87 -1.4 809,809 + Psest_0736 0.87 +1.5 809,809 + Psest_0736 0.87 +1.6 809,809 + Psest_0736 0.87 -2.3 809,809 + Psest_0736 0.87 +2.0 809,810 - Psest_0736 0.87 +0.0 809,810 - Psest_0736 0.87 -0.0 809,810 - Psest_0736 0.87 +2.4 810,059 + -1.8 810,059 + +2.8 810,059 + -2.0 810,059 + -1.1 810,059 + +0.7 810,060 - -3.6 810,060 - +1.4 810,077 + +1.6 810,077 + +1.8 810,078 - +0.9 810,078 - -2.6 810,078 - -2.0 810,078 - +2.6 810,078 - +1.7 810,084 + +1.3 810,084 + +2.0 810,084 + +2.8 810,084 + +1.8 810,085 - -0.4 810,085 - -2.4 810,085 - +0.1 810,152 - +0.3 810,165 + -0.4 810,165 + +1.1 810,166 - -1.2 810,166 - -0.2 810,166 - +1.0 810,641 - Psest_0737 0.87 -2.5 810,757 + -1.9 810,845 + -1.1 810,846 - +3.6 810,846 - +0.3 810,846 - +0.6 810,846 - +2.0 810,846 - +1.8 810,846 - +0.8 810,846 - +0.8 810,846 - -1.3 810,846 - +0.7
Or see this region's nucleotide sequence