Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0715 and Psest_0716 are separated by 53 nucleotides Psest_0716 and Psest_0717 are separated by 121 nucleotides
Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765
_0715
Psest_0716: Psest_0716 - Protein of unknown function (DUF3094)., at 784,819 to 784,992
_0716
Psest_0717: Psest_0717 - Protein of unknown function (DUF1631)., at 785,114 to 787,372
_0717
Position (kb) 784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 784.046 kb on + strand, within Psest_0715 at 784.116 kb on - strand, within Psest_0715 at 784.179 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.749 kb on - strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.946 kb on + strand, within Psest_0716 at 784.946 kb on + strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.992 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.025 kb on + strand at 785.026 kb on - strand at 785.026 kb on - strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.717 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 784,046 + Psest_0715 0.44 -0.8 784,116 - Psest_0715 0.50 -0.3 784,179 + Psest_0715 0.55 +0.8 784,300 + Psest_0715 0.64 -3.0 784,300 + Psest_0715 0.64 +1.4 784,300 + Psest_0715 0.64 +2.2 784,300 + Psest_0715 0.64 +2.2 784,300 + Psest_0715 0.64 +0.6 784,300 + Psest_0715 0.64 +1.9 784,300 + Psest_0715 0.64 +3.0 784,300 + Psest_0715 0.64 +1.6 784,300 + Psest_0715 0.64 -1.1 784,300 + Psest_0715 0.64 +2.2 784,301 - Psest_0715 0.64 +0.3 784,301 - Psest_0715 0.64 -1.3 784,301 - Psest_0715 0.64 -0.1 784,301 - Psest_0715 0.64 -1.1 784,301 - Psest_0715 0.64 -2.1 784,301 - Psest_0715 0.64 -1.8 784,301 - Psest_0715 0.64 +3.7 784,301 - Psest_0715 0.64 +1.6 784,301 - Psest_0715 0.64 +0.1 784,301 - Psest_0715 0.64 +1.9 784,301 - Psest_0715 0.64 +0.9 784,301 - Psest_0715 0.64 -2.2 784,302 + Psest_0715 0.64 -1.1 784,302 + Psest_0715 0.64 -1.6 784,302 + Psest_0715 0.64 +0.7 784,302 + Psest_0715 0.64 +2.1 784,302 + Psest_0715 0.64 -1.3 784,302 + Psest_0715 0.64 -1.8 784,302 + Psest_0715 0.64 +2.0 784,302 + Psest_0715 0.64 +0.7 784,303 - Psest_0715 0.64 +1.5 784,303 - Psest_0715 0.64 +0.7 784,431 + Psest_0715 0.74 +0.6 784,431 + Psest_0715 0.74 -2.4 784,431 + Psest_0715 0.74 -0.2 784,432 - Psest_0715 0.74 +4.4 784,432 - Psest_0715 0.74 -1.8 784,432 - Psest_0715 0.74 -2.5 784,432 - Psest_0715 0.74 +2.2 784,432 - Psest_0715 0.74 +1.4 784,432 - Psest_0715 0.74 -0.5 784,432 - Psest_0715 0.74 +1.3 784,572 + Psest_0715 0.85 +2.8 784,572 + Psest_0715 0.85 +0.2 784,572 + Psest_0715 0.85 +3.0 784,572 + Psest_0715 0.85 +0.9 784,572 + Psest_0715 0.85 -0.2 784,573 - Psest_0715 0.85 +0.2 784,573 - Psest_0715 0.85 +3.2 784,573 - Psest_0715 0.85 +2.2 784,573 - Psest_0715 0.85 +2.6 784,573 - Psest_0715 0.85 -4.1 784,573 - Psest_0715 0.85 -1.4 784,573 - Psest_0715 0.85 -0.0 784,573 - Psest_0715 0.85 +1.2 784,573 - Psest_0715 0.85 -1.2 784,573 - Psest_0715 0.85 -2.0 784,573 - Psest_0715 0.85 +2.6 784,573 - Psest_0715 0.85 -2.8 784,573 - Psest_0715 0.85 -0.1 784,573 - Psest_0715 0.85 +1.5 784,749 - -2.3 784,778 + +2.1 784,778 + +2.1 784,778 + -2.2 784,778 + +2.8 784,778 + +1.8 784,779 - -1.5 784,779 - +1.5 784,779 - -0.8 784,779 - +1.5 784,946 + Psest_0716 0.73 -0.0 784,946 + Psest_0716 0.73 -3.1 784,947 - Psest_0716 0.74 -2.2 784,947 - Psest_0716 0.74 -1.7 784,992 + +1.7 785,021 + -2.4 785,021 + -0.7 785,021 + -2.1 785,021 + +0.2 785,021 + -1.2 785,022 - -0.4 785,022 - +0.9 785,022 - +1.8 785,022 - +1.5 785,022 - -0.7 785,022 - +0.8 785,022 - -2.4 785,025 + -0.9 785,026 - +0.1 785,026 - +0.5 785,277 + +0.3 785,277 + -0.4 785,277 + -0.5 785,277 + +0.7 785,277 + -0.5 785,277 + +1.3 785,277 + +1.5 785,277 + -4.6 785,277 + -1.0 785,277 + -0.4 785,277 + +0.2 785,277 + +0.2 785,277 + +0.6 785,278 - +0.4 785,278 - +1.6 785,278 - -1.9 785,278 - -1.7 785,278 - -0.8 785,717 + Psest_0717 0.27 -0.5 785,737 + Psest_0717 0.28 -1.0 785,737 + Psest_0717 0.28 -1.4 785,737 + Psest_0717 0.28 -1.6 785,738 - Psest_0717 0.28 +1.1 785,738 - Psest_0717 0.28 -1.8 785,738 - Psest_0717 0.28 -3.7 785,738 - Psest_0717 0.28 +1.7 785,738 - Psest_0717 0.28 -0.3 785,738 - Psest_0717 0.28 -2.9 785,738 - Psest_0717 0.28 +0.7 785,738 - Psest_0717 0.28 -1.1 785,738 - Psest_0717 0.28 +1.8 785,738 - Psest_0717 0.28 +0.1 785,738 - Psest_0717 0.28 +1.2 785,738 - Psest_0717 0.28 -0.7
Or see this region's nucleotide sequence