Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0528 and Psest_0529 are separated by 117 nucleotides Psest_0529 and Psest_0530 are separated by 9 nucleotides Psest_0530 and Psest_0531 overlap by 8 nucleotides
Psest_0528: Psest_0528 - apolipoprotein N-acyltransferase, at 581,203 to 582,717
_0528
Psest_0529: Psest_0529 - Putative Mg2+ and Co2+ transporter CorC, at 582,835 to 583,677
_0529
Psest_0530: Psest_0530 - metalloprotein, YbeY/UPF0054 family, at 583,687 to 584,169
_0530
Psest_0531: Psest_0531 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 584,162 to 585,328
_0531
Position (kb) 582
583
584 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 582.735 kb on + strand at 582.735 kb on + strand at 582.735 kb on + strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.736 kb on - strand at 582.821 kb on + strand at 582.821 kb on + strand at 582.836 kb on + strand at 582.837 kb on - strand at 582.896 kb on - strand at 583.017 kb on - strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.085 kb on + strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.086 kb on - strand, within Psest_0529 at 583.489 kb on + strand, within Psest_0529 at 583.489 kb on + strand, within Psest_0529 at 583.490 kb on - strand, within Psest_0529 at 583.490 kb on - strand, within Psest_0529 at 583.586 kb on - strand, within Psest_0529 at 583.586 kb on - strand, within Psest_0529 at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 584.230 kb on - strand at 584.267 kb on + strand at 584.267 kb on + strand at 584.267 kb on + strand at 584.268 kb on - strand at 584.268 kb on - strand at 584.318 kb on + strand, within Psest_0531 at 584.319 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.676 kb on - strand, within Psest_0531 at 584.676 kb on - strand, within Psest_0531
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 582,735 + +0.4 582,735 + -1.6 582,735 + -0.4 582,736 - -0.2 582,736 - -0.1 582,736 - +1.5 582,736 - +1.7 582,736 - +3.0 582,736 - +1.1 582,736 - +0.5 582,736 - -2.1 582,821 + +2.0 582,821 + +1.4 582,836 + +1.5 582,837 - +0.9 582,896 - -2.6 583,017 - Psest_0529 0.22 -3.3 583,085 + Psest_0529 0.30 -1.3 583,085 + Psest_0529 0.30 -0.3 583,085 + Psest_0529 0.30 -3.8 583,085 + Psest_0529 0.30 -3.0 583,085 + Psest_0529 0.30 -2.6 583,085 + Psest_0529 0.30 +1.4 583,085 + Psest_0529 0.30 -3.6 583,085 + Psest_0529 0.30 -3.0 583,085 + Psest_0529 0.30 -2.1 583,085 + Psest_0529 0.30 -3.3 583,085 + Psest_0529 0.30 -3.7 583,085 + Psest_0529 0.30 -2.9 583,085 + Psest_0529 0.30 -0.3 583,085 + Psest_0529 0.30 -1.4 583,085 + Psest_0529 0.30 -2.0 583,086 - Psest_0529 0.30 -3.7 583,086 - Psest_0529 0.30 -3.6 583,086 - Psest_0529 0.30 -3.1 583,086 - Psest_0529 0.30 -0.4 583,086 - Psest_0529 0.30 -1.9 583,086 - Psest_0529 0.30 -0.9 583,086 - Psest_0529 0.30 -4.1 583,086 - Psest_0529 0.30 -1.3 583,086 - Psest_0529 0.30 -2.5 583,086 - Psest_0529 0.30 -2.6 583,086 - Psest_0529 0.30 -0.2 583,489 + Psest_0529 0.78 -4.3 583,489 + Psest_0529 0.78 -1.4 583,490 - Psest_0529 0.78 -3.4 583,490 - Psest_0529 0.78 -1.9 583,586 - Psest_0529 0.89 -3.6 583,586 - Psest_0529 0.89 -2.1 583,730 + +0.1 583,730 + +0.6 583,730 + +2.0 583,730 + +1.3 583,730 + +0.3 583,730 + +1.3 584,230 - -0.4 584,267 + -0.7 584,267 + -0.1 584,267 + -0.1 584,268 - -2.0 584,268 - +3.6 584,318 + Psest_0531 0.13 -0.7 584,319 - Psest_0531 0.13 -1.0 584,506 - Psest_0531 0.29 +1.7 584,506 - Psest_0531 0.29 -0.2 584,506 - Psest_0531 0.29 +2.6 584,506 - Psest_0531 0.29 +2.4 584,557 - Psest_0531 0.34 +0.1 584,557 - Psest_0531 0.34 -0.4 584,557 - Psest_0531 0.34 +0.4 584,590 - Psest_0531 0.37 -0.8 584,590 - Psest_0531 0.37 -1.2 584,590 - Psest_0531 0.37 -0.6 584,676 - Psest_0531 0.44 +0.3 584,676 - Psest_0531 0.44 +2.0
Or see this region's nucleotide sequence