Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4011

Experiment: RCH2 grown on a colony of Serratia

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of Serratia
4,187,221	+				+5.4
4,187,222	-				-0.8
4,187,222	-				-1.8
4,187,222	-				+0.9
4,187,222	-				-0.2
4,187,318	+		Psest_4009	0.24	-0.7
4,187,319	-		Psest_4009	0.24	+2.3
4,187,319	-		Psest_4009	0.24	-1.8
4,187,359	+		Psest_4009	0.37	+1.6
4,187,360	-		Psest_4009	0.37	+4.1
4,187,360	-		Psest_4009	0.37	-0.7
4,187,360	-		Psest_4009	0.37	+0.8
4,187,360	-		Psest_4009	0.37	+2.5
4,187,360	-		Psest_4009	0.37	-1.9
4,187,449	+		Psest_4009	0.66	-2.1
4,187,583	-				-0.9
4,187,892	-		Psest_4010	0.69	-1.1
4,187,892	-		Psest_4010	0.69	-3.3
4,188,063	-				-0.3
4,188,063	-				+1.3
4,188,129	+				-0.2
4,188,129	+				-1.9
4,188,129	+				-1.3
4,188,129	+				-1.7
4,188,129	+				-0.3
4,188,129	+				+0.8
4,188,129	+				+0.7
4,188,129	+				-2.9
4,188,129	+				-1.4
4,188,129	+				-3.4
4,188,129	+				+0.2
4,188,129	+				-0.2
4,188,129	+				+3.8
4,188,130	-				-2.8
4,188,130	-				-0.1
4,188,130	-				+0.8
4,188,130	-				+2.4
4,188,130	-				-1.4
4,188,130	-				-1.1
4,188,130	-				-2.4
4,188,130	-				-2.4
4,188,156	+				+0.9
4,188,157	-				+0.3
4,188,162	+				-0.9
4,188,162	+				+2.4
4,188,162	+				-3.2
4,188,163	-				+1.6
4,188,163	-				-2.6
4,188,163	-				-3.1
4,188,163	-				-2.4
4,188,177	+				+1.6
4,188,341	-		Psest_4011	0.21	-0.1
4,188,341	-		Psest_4011	0.21	-1.9
4,188,341	-		Psest_4011	0.21	-0.6
4,188,348	+		Psest_4011	0.21	+1.6
4,188,348	+		Psest_4011	0.21	+0.4
4,188,348	+		Psest_4011	0.21	-0.5
4,188,349	-		Psest_4011	0.21	-0.1
4,188,349	-		Psest_4011	0.21	-0.5
4,188,349	-		Psest_4011	0.21	-1.4
4,188,349	-		Psest_4011	0.21	-1.0
4,188,486	+		Psest_4011	0.34	+1.0
4,188,486	+		Psest_4011	0.34	-1.1
4,188,486	+		Psest_4011	0.34	-1.4
4,188,486	+		Psest_4011	0.34	-3.4
4,188,487	-		Psest_4011	0.34	-0.4
4,188,487	-		Psest_4011	0.34	-0.9
4,188,487	-		Psest_4011	0.34	+1.9
4,188,487	-		Psest_4011	0.34	-0.7
4,188,487	-		Psest_4011	0.34	-0.1
4,188,489	+		Psest_4011	0.34	+0.9
4,188,489	+		Psest_4011	0.34	-1.2
4,188,489	+		Psest_4011	0.34	+1.3
4,188,489	+		Psest_4011	0.34	+3.3
4,188,489	+		Psest_4011	0.34	-2.1
4,188,489	+		Psest_4011	0.34	+1.6
4,188,489	+		Psest_4011	0.34	-1.4
4,188,490	-		Psest_4011	0.34	+1.0
4,188,490	-		Psest_4011	0.34	-2.1
4,188,490	-		Psest_4011	0.34	-0.7
4,188,490	-		Psest_4011	0.34	-0.5
4,188,490	-		Psest_4011	0.34	+1.1
4,188,490	-		Psest_4011	0.34	-0.2
4,188,490	-		Psest_4011	0.34	+1.7
4,188,490	-		Psest_4011	0.34	-1.9
4,188,490	-		Psest_4011	0.34	-1.6
4,188,490	-		Psest_4011	0.34	+3.1
4,188,492	+		Psest_4011	0.34	+0.5
4,188,492	+		Psest_4011	0.34	+0.1
4,188,492	+		Psest_4011	0.34	+0.1
4,188,492	+		Psest_4011	0.34	-0.3
4,188,492	+		Psest_4011	0.34	-0.6
4,188,492	+		Psest_4011	0.34	-0.7
4,188,492	+		Psest_4011	0.34	-1.6
4,188,492	+		Psest_4011	0.34	-1.3
4,188,493	-		Psest_4011	0.34	-0.4
4,188,493	-		Psest_4011	0.34	-1.1
4,188,493	-		Psest_4011	0.34	-2.1
4,188,493	-		Psest_4011	0.34	+0.1
4,188,493	-		Psest_4011	0.34	+2.5
4,188,493	-		Psest_4011	0.34	-2.9
4,188,493	-		Psest_4011	0.34	+2.5
4,188,493	-		Psest_4011	0.34	-0.7
4,188,493	-		Psest_4011	0.34	-1.3
4,188,531	+		Psest_4011	0.38	+0.0
4,188,531	+		Psest_4011	0.38	+0.8
4,188,532	-		Psest_4011	0.38	-0.1
4,188,532	-		Psest_4011	0.38	+0.3
4,188,532	-		Psest_4011	0.38	+1.5
4,188,768	+		Psest_4011	0.59	+2.1
4,188,768	+		Psest_4011	0.59	-1.1
4,188,768	+		Psest_4011	0.59	+1.4
4,188,769	-		Psest_4011	0.59	+0.9
4,188,769	-		Psest_4011	0.59	-1.7
4,188,769	-		Psest_4011	0.59	+0.6
4,188,769	-		Psest_4011	0.59	-1.6
4,188,769	-		Psest_4011	0.59	-2.3
4,188,769	-		Psest_4011	0.59	-2.4
4,188,769	-		Psest_4011	0.59	+1.0
4,188,769	-		Psest_4011	0.59	+0.9
4,188,769	-		Psest_4011	0.59	-1.1
4,188,889	-		Psest_4011	0.70	+2.1
4,188,941	+		Psest_4011	0.75	-0.3
4,188,941	+		Psest_4011	0.75	+0.8
4,188,941	+		Psest_4011	0.75	-0.5
4,188,975	+		Psest_4011	0.78	-1.6
4,188,976	-		Psest_4011	0.78	+3.1
4,188,976	-		Psest_4011	0.78	+0.2
4,189,041	-		Psest_4011	0.84	-0.3
4,189,182	-				-0.5
4,189,233	-				+1.5
4,189,233	-				+1.0
4,189,242	+				-1.9
4,189,243	-				-0.6
4,189,303	+				-1.7
4,189,383	-				+3.0
4,189,389	-				-2.4
4,189,416	+				+0.9
4,189,416	+				+0.7
4,189,416	+				-1.9
4,189,416	+				-1.6
4,189,416	+				+1.1
4,189,416	+				+2.4
4,189,416	+				-2.8
4,189,416	+				+2.5
4,189,416	+				-1.6
4,189,416	+				+0.7
4,189,416	+				-0.6
4,189,416	+				+0.4
4,189,416	+				-2.8
4,189,416	+				+2.3
4,189,416	+				+1.9
4,189,417	-				-0.6
4,189,417	-				-3.1
4,189,417	-				+0.4
4,189,417	-				+3.8
4,189,417	-				+1.6
4,189,417	-				-2.4
4,189,417	-				+0.3
4,189,417	-				-0.8
4,189,417	-				+0.2
4,189,417	-				-1.7
4,189,417	-				+1.2
4,189,418	+				-2.3
4,189,418	+				-0.1
4,189,419	-				-0.3
4,189,419	-				-3.0
4,189,419	-				+6.3
4,189,419	-				-1.6
4,189,419	-				-3.3
4,189,423	+				+1.9
4,189,423	+				-0.4
4,189,423	+				-0.8
4,189,423	+				-0.5
4,189,423	+				-2.6
4,189,424	-				+0.5
4,189,424	-				+0.1
4,189,424	-				+0.9
4,189,424	-				-2.8
4,189,432	+				-1.3
4,189,432	+				+1.3
4,189,493	+				+1.9
4,189,496	+				+0.8
4,189,496	+				+0.5
4,189,496	+				-1.6
4,189,496	+				+2.0
4,189,497	-				-0.4
4,189,497	-				+0.7
4,189,506	+				-0.5
4,189,506	+				+1.9
4,189,506	+				+1.9
4,189,506	+				+0.2
4,189,506	+				-0.4
4,189,507	-				-1.1
4,189,507	-				-0.2
4,189,507	-				-1.8
4,189,507	-				-1.4
4,189,507	-				-0.5
4,189,584	+		Psest_4012	0.13	-1.7
4,189,584	+		Psest_4012	0.13	-0.9
4,189,584	+		Psest_4012	0.13	-1.7
4,189,584	+		Psest_4012	0.13	-3.3
4,189,584	+		Psest_4012	0.13	+1.0
4,189,584	+		Psest_4012	0.13	-0.0
4,189,584	+		Psest_4012	0.13	-1.4
4,189,584	+		Psest_4012	0.13	+0.1
4,189,585	-		Psest_4012	0.14	+3.7
4,189,585	-		Psest_4012	0.14	-0.8
4,189,585	-		Psest_4012	0.14	-1.1
4,189,585	-		Psest_4012	0.14	-3.1
4,189,585	-		Psest_4012	0.14	+0.8
4,189,585	-		Psest_4012	0.14	-0.8
4,189,585	-		Psest_4012	0.14	+0.1
4,189,585	-		Psest_4012	0.14	-3.4
4,189,585	-		Psest_4012	0.14	-1.7
4,189,585	-		Psest_4012	0.14	-1.5
4,189,585	-		Psest_4012	0.14	-0.6
4,189,585	-		Psest_4012	0.14	-0.6
4,189,585	-		Psest_4012	0.14	+0.2
4,189,585	-		Psest_4012	0.14	+0.5
4,189,585	-		Psest_4012	0.14	-2.3
4,189,688	+		Psest_4012	0.32	-2.5
4,189,688	+		Psest_4012	0.32	-2.2
4,189,688	+		Psest_4012	0.32	-0.3
4,189,688	+		Psest_4012	0.32	+1.6
4,189,689	-		Psest_4012	0.33	-2.7
4,189,689	-		Psest_4012	0.33	+0.6
4,189,766	+		Psest_4012	0.47	+2.7
4,189,868	+		Psest_4012	0.65	+0.5
4,189,868	+		Psest_4012	0.65	+0.0
4,189,868	+		Psest_4012	0.65	+0.8
4,189,868	+		Psest_4012	0.65	-1.1
4,189,868	+		Psest_4012	0.65	-1.6
4,189,868	+		Psest_4012	0.65	+1.5
4,189,868	+		Psest_4012	0.65	+1.0
4,189,869	-		Psest_4012	0.66	+0.7
4,189,869	-		Psest_4012	0.66	+0.0
4,189,869	-		Psest_4012	0.66	-0.3
4,189,876	+		Psest_4012	0.67	-3.1
4,189,877	-		Psest_4012	0.67	-3.3
4,189,877	-		Psest_4012	0.67	-1.9
4,189,921	+		Psest_4012	0.75	-2.3
4,189,921	+		Psest_4012	0.75	+0.4
4,189,921	+		Psest_4012	0.75	+0.3
4,189,922	-		Psest_4012	0.75	-0.8
4,189,922	-		Psest_4012	0.75	-0.4
4,189,922	-		Psest_4012	0.75	-1.7
4,189,922	-		Psest_4012	0.75	-1.6
4,189,922	-		Psest_4012	0.75	-2.2
4,189,922	-		Psest_4012	0.75	+3.5
4,189,922	-		Psest_4012	0.75	-1.1
4,189,922	-		Psest_4012	0.75	+0.2
4,189,922	-		Psest_4012	0.75	-0.1
4,189,922	-		Psest_4012	0.75	-0.9
4,189,931	+		Psest_4012	0.77	-0.2
4,189,931	+		Psest_4012	0.77	-2.8
4,190,109	+				+3.0
4,190,191	-		Psest_4013	0.10	+0.6