Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0356 and Psest_0357 are separated by 202 nucleotides Psest_0357 and Psest_0358 overlap by 4 nucleotides Psest_0358 and Psest_0359 are separated by 116 nucleotides Psest_0359 and Psest_0360 are separated by 57 nucleotides
Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872
_0356
Psest_0357: Psest_0357 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 383,075 to 383,842
_0357
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 382.844 kb on + strand at 382.938 kb on - strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.951 kb on - strand at 383.027 kb on + strand at 383.027 kb on + strand at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.541 kb on - strand, within Psest_0357 at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.820 kb on + strand at 383.828 kb on + strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.873 kb on - strand at 383.873 kb on - strand at 383.873 kb on - strand at 383.873 kb on - strand at 384.094 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.265 kb on + strand, within Psest_0358 at 384.265 kb on + strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.269 kb on - strand, within Psest_0358 at 384.280 kb on + strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.352 kb on + strand, within Psest_0358 at 384.368 kb on - strand, within Psest_0358 at 384.397 kb on + strand, within Psest_0358 at 384.397 kb on + strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.401 kb on - strand, within Psest_0358 at 384.401 kb on - strand, within Psest_0358 at 384.481 kb on + strand, within Psest_0358 at 384.506 kb on - strand, within Psest_0358 at 384.506 kb on - strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.442 kb on - strand at 385.470 kb on + strand at 385.470 kb on + strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.497 kb on + strand at 385.506 kb on + strand at 385.520 kb on + strand at 385.521 kb on - strand at 386.190 kb on + strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 382,844 + -0.6 382,938 - -1.3 382,950 + -1.1 382,950 + +0.2 382,950 + +2.4 382,951 - +3.6 383,027 + +0.4 383,027 + +3.9 383,224 - Psest_0357 0.19 +2.0 383,224 - Psest_0357 0.19 -1.4 383,224 - Psest_0357 0.19 -2.2 383,394 - Psest_0357 0.42 +2.7 383,394 - Psest_0357 0.42 +0.8 383,541 - Psest_0357 0.61 -3.0 383,780 + -2.4 383,780 + -0.2 383,780 + +0.1 383,780 + -0.3 383,780 + +1.3 383,781 - +3.3 383,781 - -0.9 383,781 - +2.3 383,781 - -2.2 383,781 - -0.6 383,781 - +0.6 383,781 - -1.2 383,781 - -0.1 383,820 + -0.1 383,828 + +2.5 383,829 - +1.3 383,829 - +0.4 383,829 - +2.0 383,829 - -0.1 383,829 - +0.9 383,829 - -2.9 383,872 + +1.1 383,872 + +0.4 383,872 + -0.5 383,872 + +1.3 383,873 - -2.4 383,873 - -2.9 383,873 - +3.1 383,873 - +3.0 384,094 + Psest_0358 0.16 +3.4 384,232 + Psest_0358 0.24 +0.1 384,232 + Psest_0358 0.24 +0.2 384,232 + Psest_0358 0.24 +2.9 384,233 - Psest_0358 0.25 +1.1 384,233 - Psest_0358 0.25 -3.9 384,233 - Psest_0358 0.25 -1.5 384,233 - Psest_0358 0.25 +1.1 384,265 + Psest_0358 0.27 -3.7 384,265 + Psest_0358 0.27 +1.9 384,266 - Psest_0358 0.27 +2.3 384,266 - Psest_0358 0.27 -2.3 384,266 - Psest_0358 0.27 +1.0 384,266 - Psest_0358 0.27 +0.7 384,266 - Psest_0358 0.27 -3.1 384,266 - Psest_0358 0.27 +1.4 384,266 - Psest_0358 0.27 +0.2 384,266 - Psest_0358 0.27 +1.6 384,266 - Psest_0358 0.27 +5.3 384,266 - Psest_0358 0.27 -3.1 384,269 - Psest_0358 0.27 +0.4 384,280 + Psest_0358 0.27 -3.2 384,281 - Psest_0358 0.28 +0.0 384,281 - Psest_0358 0.28 -3.3 384,281 - Psest_0358 0.28 -1.4 384,281 - Psest_0358 0.28 +2.7 384,281 - Psest_0358 0.28 +1.2 384,281 - Psest_0358 0.28 -1.4 384,281 - Psest_0358 0.28 -0.1 384,352 + Psest_0358 0.32 +2.0 384,368 - Psest_0358 0.33 +1.5 384,397 + Psest_0358 0.35 +2.1 384,397 + Psest_0358 0.35 +2.4 384,398 - Psest_0358 0.35 +1.7 384,398 - Psest_0358 0.35 -0.8 384,398 - Psest_0358 0.35 +1.3 384,401 - Psest_0358 0.35 +1.2 384,401 - Psest_0358 0.35 -2.0 384,481 + Psest_0358 0.40 +1.7 384,506 - Psest_0358 0.42 -2.4 384,506 - Psest_0358 0.42 -2.8 384,814 + Psest_0358 0.61 -0.6 384,814 + Psest_0358 0.61 +1.6 384,814 + Psest_0358 0.61 +0.6 384,815 - Psest_0358 0.61 -1.9 384,815 - Psest_0358 0.61 -0.5 384,815 - Psest_0358 0.61 -2.0 384,922 + Psest_0358 0.67 +0.1 384,922 + Psest_0358 0.67 -2.0 384,922 + Psest_0358 0.67 +1.4 384,922 + Psest_0358 0.67 +0.1 384,923 - Psest_0358 0.68 -0.4 384,923 - Psest_0358 0.68 +0.5 384,923 - Psest_0358 0.68 -0.9 384,923 - Psest_0358 0.68 +1.0 384,923 - Psest_0358 0.68 +0.3 384,923 - Psest_0358 0.68 +1.6 384,923 - Psest_0358 0.68 +1.9 384,923 - Psest_0358 0.68 +0.6 384,923 - Psest_0358 0.68 -1.5 384,949 + Psest_0358 0.69 +2.6 384,949 + Psest_0358 0.69 -1.5 384,950 - Psest_0358 0.69 +0.5 384,950 - Psest_0358 0.69 -0.0 384,950 - Psest_0358 0.69 -0.9 384,959 - Psest_0358 0.70 +1.4 384,959 - Psest_0358 0.70 -0.9 385,285 + +0.1 385,285 + +1.6 385,285 + +3.7 385,285 + +0.1 385,285 + +1.5 385,285 + -2.2 385,285 + -1.5 385,285 + +0.6 385,286 - -0.2 385,286 - +0.1 385,286 - +0.2 385,286 - -1.1 385,286 - -0.1 385,442 - +1.0 385,470 + -2.4 385,470 + -1.8 385,471 - -3.0 385,471 - -0.4 385,471 - -3.6 385,471 - +0.9 385,497 + +1.4 385,506 + -2.6 385,520 + +0.4 385,521 - -2.5 386,190 + Psest_0359 0.84 +1.8 386,191 - Psest_0359 0.84 +0.7 386,191 - Psest_0359 0.84 -0.3 386,191 - Psest_0359 0.84 +1.1 386,191 - Psest_0359 0.84 +0.6
Or see this region's nucleotide sequence