Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3018

Experiment: RCH2 grown on a colony of Serratia

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of Serratia
3,205,956	+				+1.3
3,205,956	+				+1.7
3,205,957	-				-0.4
3,205,957	-				-3.9
3,205,957	-				-0.1
3,206,114	+		Psest_3017	0.29	-3.9
3,206,114	+		Psest_3017	0.29	+0.2
3,206,115	-		Psest_3017	0.30	-1.8
3,206,115	-		Psest_3017	0.30	+0.9
3,206,115	-		Psest_3017	0.30	-0.1
3,206,115	-		Psest_3017	0.30	+2.1
3,206,115	-		Psest_3017	0.30	+0.9
3,206,154	-		Psest_3017	0.34	+2.6
3,206,225	-		Psest_3017	0.43	+1.6
3,206,225	-		Psest_3017	0.43	-2.5
3,206,462	+		Psest_3017	0.73	-2.9
3,206,462	+		Psest_3017	0.73	-1.4
3,206,462	+		Psest_3017	0.73	-2.3
3,206,462	+		Psest_3017	0.73	+1.3
3,206,462	+		Psest_3017	0.73	+1.8
3,206,486	+		Psest_3017	0.76	-2.1
3,206,730	+				+0.2
3,206,730	+				+1.8
3,206,770	-				+2.5
3,206,779	-				+0.1
3,206,787	+				-1.8
3,206,788	-				+0.4
3,206,880	+		Psest_3018	0.14	+3.9
3,206,880	+		Psest_3018	0.14	+1.1
3,206,880	+		Psest_3018	0.14	+1.0
3,206,880	+		Psest_3018	0.14	-0.2
3,206,881	-		Psest_3018	0.14	+1.9
3,206,881	-		Psest_3018	0.14	+2.3
3,206,881	-		Psest_3018	0.14	+0.2
3,206,881	-		Psest_3018	0.14	-0.1
3,206,881	-		Psest_3018	0.14	-2.2
3,206,972	+		Psest_3018	0.21	+0.9
3,206,972	+		Psest_3018	0.21	+2.0
3,206,972	+		Psest_3018	0.21	+1.1
3,206,985	+		Psest_3018	0.22	+1.2
3,206,985	+		Psest_3018	0.22	-1.5
3,206,986	-		Psest_3018	0.22	+1.6
3,207,015	+		Psest_3018	0.25	-0.2
3,207,015	+		Psest_3018	0.25	-2.1
3,207,015	+		Psest_3018	0.25	-3.4
3,207,015	+		Psest_3018	0.25	+1.6
3,207,015	+		Psest_3018	0.25	+0.2
3,207,015	+		Psest_3018	0.25	+3.4
3,207,015	+		Psest_3018	0.25	-0.7
3,207,015	+		Psest_3018	0.25	-0.9
3,207,015	+		Psest_3018	0.25	+0.2
3,207,015	+		Psest_3018	0.25	-1.4
3,207,015	+		Psest_3018	0.25	+2.3
3,207,016	-		Psest_3018	0.25	+1.1
3,207,016	-		Psest_3018	0.25	+1.2
3,207,016	-		Psest_3018	0.25	-0.9
3,207,016	-		Psest_3018	0.25	-2.8
3,207,016	-		Psest_3018	0.25	+0.0
3,207,016	-		Psest_3018	0.25	-1.6
3,207,016	-		Psest_3018	0.25	-0.8
3,207,016	-		Psest_3018	0.25	+3.5
3,207,120	+		Psest_3018	0.33	+0.8
3,207,120	+		Psest_3018	0.33	+3.1
3,207,120	+		Psest_3018	0.33	-0.2
3,207,120	+		Psest_3018	0.33	+0.2
3,207,121	-		Psest_3018	0.33	+3.5
3,207,121	-		Psest_3018	0.33	-0.2
3,207,669	+		Psest_3018	0.77	-0.5
3,207,669	+		Psest_3018	0.77	+0.9
3,207,670	-		Psest_3018	0.77	-1.1
3,207,670	-		Psest_3018	0.77	+3.3
3,207,670	-		Psest_3018	0.77	+0.7
3,207,670	-		Psest_3018	0.77	+1.0
3,207,670	-		Psest_3018	0.77	+1.0
3,207,670	-		Psest_3018	0.77	-1.0
3,207,670	-		Psest_3018	0.77	+2.8
3,207,670	-		Psest_3018	0.77	-0.8
3,207,706	-		Psest_3018	0.80	-0.8
3,207,883	+				+4.0
3,207,939	+				+1.6
3,207,939	+				-2.2
3,207,939	+				+1.5
3,207,939	+				+0.2
3,207,939	+				+2.0
3,207,939	+				-0.8
3,207,939	+				+2.2
3,207,939	+				-0.4
3,207,939	+				+0.6
3,207,940	-				+2.2
3,207,940	-				-2.9
3,207,940	-				+3.4
3,207,940	-				-0.7
3,207,940	-				+0.1
3,207,940	-				+0.9
3,207,940	-				+1.9
3,207,958	+				+1.1
3,207,958	+				-0.8
3,207,958	+				-2.5
3,207,959	-				-1.3
3,207,959	-				-1.3
3,207,959	-				-2.8
3,207,959	-				+2.3
3,207,959	-				-1.2
3,207,959	-				+1.3
3,207,959	-				-0.8
3,207,959	-				-1.0
3,207,967	+				-1.8
3,207,968	-				+3.0
3,208,038	+				-2.5
3,208,122	+				+0.7
3,208,122	+				+0.0
3,208,137	-				+0.4
3,208,137	-				+0.9
3,208,137	-				+1.2
3,208,202	+				-1.2
3,208,202	+				-0.1
3,208,203	-		Psest_3019	0.10	+0.1
3,208,203	-		Psest_3019	0.10	-2.6
3,208,209	+		Psest_3019	0.11	-1.0
3,208,209	+		Psest_3019	0.11	-1.8
3,208,210	-		Psest_3019	0.11	+2.4
3,208,210	-		Psest_3019	0.11	-1.5
3,208,210	-		Psest_3019	0.11	-0.5
3,208,243	+		Psest_3019	0.18	-3.1
3,208,292	+		Psest_3019	0.27	+0.0
3,208,292	+		Psest_3019	0.27	+0.1
3,208,292	+		Psest_3019	0.27	-0.6
3,208,292	+		Psest_3019	0.27	-1.7
3,208,292	+		Psest_3019	0.27	+1.3
3,208,292	+		Psest_3019	0.27	+1.1
3,208,292	+		Psest_3019	0.27	-2.1
3,208,292	+		Psest_3019	0.27	+2.1
3,208,292	+		Psest_3019	0.27	-1.6
3,208,292	+		Psest_3019	0.27	+1.6
3,208,292	+		Psest_3019	0.27	+1.8
3,208,292	+		Psest_3019	0.27	+0.1
3,208,292	+		Psest_3019	0.27	-1.3
3,208,293	-		Psest_3019	0.27	-1.4
3,208,293	-		Psest_3019	0.27	+1.9
3,208,293	-		Psest_3019	0.27	-0.5
3,208,293	-		Psest_3019	0.27	+0.4
3,208,293	-		Psest_3019	0.27	+1.1
3,208,293	-		Psest_3019	0.27	-1.3
3,208,293	-		Psest_3019	0.27	+1.9
3,208,293	-		Psest_3019	0.27	-2.8
3,208,293	-		Psest_3019	0.27	-0.6
3,208,293	-		Psest_3019	0.27	+1.3
3,208,293	-		Psest_3019	0.27	+1.8
3,208,293	-		Psest_3019	0.27	+2.3
3,208,293	-		Psest_3019	0.27	-1.6
3,208,293	-		Psest_3019	0.27	+1.0
3,208,293	-		Psest_3019	0.27	+3.5
3,208,372	+		Psest_3019	0.42	+0.3
3,208,448	+		Psest_3019	0.57	-0.6
3,208,449	-		Psest_3019	0.57	-0.0
3,208,488	+		Psest_3019	0.64	+2.3
3,208,488	+		Psest_3019	0.64	-0.4
3,208,489	-		Psest_3019	0.65	+0.7
3,208,668	-				-0.9
3,208,815	+		Psest_3020	0.10	+0.1
3,208,815	+		Psest_3020	0.10	+1.1
3,208,816	-		Psest_3020	0.10	+2.5
3,208,816	-		Psest_3020	0.10	+1.8
3,208,816	-		Psest_3020	0.10	+0.8
3,208,816	-		Psest_3020	0.10	-0.2
3,208,816	-		Psest_3020	0.10	+1.4
3,208,830	+		Psest_3020	0.12	-2.1
3,208,830	+		Psest_3020	0.12	+1.6
3,208,831	-		Psest_3020	0.13	+3.4
3,208,831	-		Psest_3020	0.13	-2.1
3,208,831	-		Psest_3020	0.13	+1.0
3,208,908	+		Psest_3020	0.25	+0.9
3,208,908	+		Psest_3020	0.25	-0.0
3,208,908	+		Psest_3020	0.25	+3.9
3,208,908	+		Psest_3020	0.25	+0.6
3,208,908	+		Psest_3020	0.25	-3.0
3,208,909	-		Psest_3020	0.25	+1.3
3,208,909	-		Psest_3020	0.25	+1.0
3,208,909	-		Psest_3020	0.25	+2.4
3,208,909	-		Psest_3020	0.25	-2.6
3,208,909	-		Psest_3020	0.25	-0.2