Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1500

Experiment: RCH2 grown on a colony of Serratia

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1498 and Psest_1499 are separated by 2 nucleotidesPsest_1499 and Psest_1500 are separated by 11 nucleotidesPsest_1500 and Psest_1501 overlap by 1 nucleotidesPsest_1501 and Psest_1502 overlap by 4 nucleotides Psest_1498: Psest_1498 - tol-pal system-associated acyl-CoA thioesterase, at 1,599,870 to 1,600,313 _1498 Psest_1499: Psest_1499 - TolQ protein, at 1,600,316 to 1,601,008 _1499 Psest_1500: Psest_1500 - TolR protein, at 1,601,020 to 1,601,460 _1500 Psest_1501: Psest_1501 - TolA protein, at 1,601,460 to 1,602,461 _1501 Psest_1502: Psest_1502 - tol-pal system beta propeller repeat protein TolB, at 1,602,458 to 1,603,759 _1502 Position (kb) 1601 1602Strain fitness (log2 ratio) -1 0 1at 1600.180 kb on + strand, within Psest_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia
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1,600,180 + Psest_1498 0.70 +0.1

Or see this region's nucleotide sequence