Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0803 and Psest_0804 are separated by 8 nucleotides Psest_0804 and Psest_0805 are separated by 23 nucleotides Psest_0805 and Psest_0806 overlap by 4 nucleotides
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Psest_0805: Psest_0805 - hypothetical protein, at 881,469 to 881,942
_0805
Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054
_0806
Position (kb) 878
879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand at 878.016 kb on - strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.298 kb on + strand, within Psest_0803 at 878.393 kb on + strand at 878.393 kb on + strand at 878.429 kb on + strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.485 kb on - strand at 878.619 kb on - strand at 878.635 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.650 kb on - strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.967 kb on - strand, within Psest_0804 at 879.014 kb on + strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.124 kb on + strand, within Psest_0804 at 879.182 kb on + strand, within Psest_0804 at 879.294 kb on - strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.563 kb on + strand, within Psest_0804 at 879.596 kb on + strand, within Psest_0804 at 879.596 kb on + strand, within Psest_0804 at 879.597 kb on - strand, within Psest_0804 at 879.683 kb on + strand, within Psest_0804 at 879.845 kb on + strand, within Psest_0804 at 879.881 kb on + strand, within Psest_0804 at 880.113 kb on + strand, within Psest_0804 at 880.114 kb on - strand, within Psest_0804 at 880.114 kb on - strand, within Psest_0804 at 880.135 kb on + strand, within Psest_0804 at 880.136 kb on - strand, within Psest_0804 at 880.136 kb on - strand, within Psest_0804 at 880.168 kb on - strand, within Psest_0804 at 880.241 kb on + strand, within Psest_0804 at 880.242 kb on - strand, within Psest_0804 at 880.242 kb on - strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.370 kb on + strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.371 kb on - strand, within Psest_0804 at 880.388 kb on + strand, within Psest_0804 at 880.444 kb on + strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.445 kb on - strand, within Psest_0804 at 880.448 kb on + strand, within Psest_0804 at 880.448 kb on + strand, within Psest_0804 at 880.449 kb on - strand, within Psest_0804 at 880.577 kb on + strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.578 kb on - strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.667 kb on + strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.668 kb on - strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.755 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.844 kb on + strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.845 kb on - strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.853 kb on + strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.854 kb on - strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.889 kb on + strand, within Psest_0804 at 880.890 kb on - strand, within Psest_0804 at 880.890 kb on - strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.934 kb on + strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 880.935 kb on - strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.027 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.033 kb on + strand, within Psest_0804 at 881.162 kb on + strand at 881.162 kb on + strand at 881.162 kb on + strand at 881.163 kb on - strand at 881.163 kb on - strand at 881.203 kb on - strand at 881.304 kb on + strand at 881.305 kb on - strand at 881.305 kb on - strand at 881.451 kb on + strand at 881.451 kb on + strand at 881.624 kb on + strand, within Psest_0805 at 881.682 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.689 kb on + strand, within Psest_0805 at 881.991 kb on + strand at 881.992 kb on - strand at 881.992 kb on - strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.048 kb on + strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.049 kb on - strand at 882.244 kb on - strand, within Psest_0806 at 882.308 kb on - strand, within Psest_0806 at 882.308 kb on - strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.423 kb on + strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.424 kb on - strand, within Psest_0806 at 882.426 kb on + strand, within Psest_0806 at 882.426 kb on + strand, within Psest_0806
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 877,495 + Psest_0802 0.62 -1.4 877,622 + Psest_0802 0.77 -0.4 877,622 + Psest_0802 0.77 -2.1 877,623 - Psest_0802 0.77 -1.5 877,743 + +1.5 877,743 + -0.4 877,855 + -2.1 877,855 + +1.4 877,855 + -0.8 877,855 + -1.3 877,856 - -0.9 877,856 - -0.4 877,856 - +2.7 877,856 - +3.2 877,883 + +0.2 877,884 - -1.9 877,887 + +2.7 877,887 + -0.6 877,887 + +0.8 877,887 + -0.1 877,887 + -1.4 877,888 - +3.0 877,888 - +1.0 878,016 - Psest_0803 0.23 +0.3 878,262 + Psest_0803 0.70 +1.5 878,262 + Psest_0803 0.70 -0.6 878,262 + Psest_0803 0.70 +0.4 878,262 + Psest_0803 0.70 +0.9 878,262 + Psest_0803 0.70 -2.8 878,262 + Psest_0803 0.70 +1.8 878,262 + Psest_0803 0.70 -1.2 878,263 - Psest_0803 0.70 +0.1 878,263 - Psest_0803 0.70 -0.9 878,263 - Psest_0803 0.70 +4.6 878,263 - Psest_0803 0.70 -2.5 878,298 + Psest_0803 0.77 +1.5 878,393 + -0.4 878,393 + -1.2 878,429 + -0.3 878,430 - -1.4 878,430 - +2.2 878,430 - -2.4 878,484 + -2.3 878,484 + +4.0 878,484 + -1.9 878,484 + -1.8 878,485 - +0.7 878,619 - +3.5 878,635 + -0.5 878,639 + -2.0 878,639 + +0.6 878,639 + -2.6 878,640 - -0.5 878,640 - -1.9 878,640 - -1.2 878,640 - +0.6 878,640 - +1.6 878,640 - +1.9 878,640 - -2.4 878,640 - +0.1 878,650 - -1.6 878,651 + +1.2 878,651 + -3.1 878,651 + +1.2 878,652 - +3.1 878,652 - -1.4 878,652 - -0.9 878,652 - -0.6 878,652 - +1.5 878,784 - Psest_0804 0.12 -2.3 878,784 - Psest_0804 0.12 -0.9 878,784 - Psest_0804 0.12 +4.1 878,784 - Psest_0804 0.12 +1.4 878,939 + Psest_0804 0.17 +0.9 878,939 + Psest_0804 0.17 +0.3 878,939 + Psest_0804 0.17 -1.9 878,939 + Psest_0804 0.17 -1.4 878,940 - Psest_0804 0.17 +0.2 878,940 - Psest_0804 0.17 +3.4 878,940 - Psest_0804 0.17 +2.0 878,967 - Psest_0804 0.18 -1.7 879,014 + Psest_0804 0.19 -0.4 879,015 - Psest_0804 0.19 +4.3 879,015 - Psest_0804 0.19 +1.2 879,124 + Psest_0804 0.23 +2.0 879,182 + Psest_0804 0.25 -0.8 879,294 - Psest_0804 0.29 +0.2 879,563 + Psest_0804 0.38 -0.4 879,563 + Psest_0804 0.38 +0.7 879,563 + Psest_0804 0.38 +0.9 879,563 + Psest_0804 0.38 +2.6 879,563 + Psest_0804 0.38 -2.8 879,596 + Psest_0804 0.39 +3.0 879,596 + Psest_0804 0.39 -3.1 879,597 - Psest_0804 0.39 +1.6 879,683 + Psest_0804 0.42 +3.5 879,845 + Psest_0804 0.47 +1.2 879,881 + Psest_0804 0.48 -0.2 880,113 + Psest_0804 0.56 +2.1 880,114 - Psest_0804 0.56 -2.5 880,114 - Psest_0804 0.56 -0.9 880,135 + Psest_0804 0.57 -0.6 880,136 - Psest_0804 0.57 -2.5 880,136 - Psest_0804 0.57 +0.3 880,168 - Psest_0804 0.58 +2.7 880,241 + Psest_0804 0.60 +2.3 880,242 - Psest_0804 0.60 -1.1 880,242 - Psest_0804 0.60 +2.7 880,370 + Psest_0804 0.64 -1.5 880,370 + Psest_0804 0.64 +1.0 880,370 + Psest_0804 0.64 +2.0 880,371 - Psest_0804 0.64 +3.1 880,371 - Psest_0804 0.64 -1.8 880,371 - Psest_0804 0.64 -1.0 880,388 + Psest_0804 0.65 +3.2 880,444 + Psest_0804 0.67 -0.7 880,445 - Psest_0804 0.67 +0.1 880,445 - Psest_0804 0.67 +0.9 880,445 - Psest_0804 0.67 +0.0 880,445 - Psest_0804 0.67 -1.9 880,448 + Psest_0804 0.67 +1.2 880,448 + Psest_0804 0.67 -0.6 880,449 - Psest_0804 0.67 +0.6 880,577 + Psest_0804 0.71 -3.0 880,578 - Psest_0804 0.71 -0.7 880,578 - Psest_0804 0.71 +1.5 880,578 - Psest_0804 0.71 +2.1 880,667 + Psest_0804 0.74 -1.1 880,667 + Psest_0804 0.74 +1.7 880,667 + Psest_0804 0.74 +0.8 880,667 + Psest_0804 0.74 +4.3 880,667 + Psest_0804 0.74 +1.7 880,667 + Psest_0804 0.74 +2.4 880,667 + Psest_0804 0.74 +2.7 880,667 + Psest_0804 0.74 +4.5 880,667 + Psest_0804 0.74 -2.9 880,667 + Psest_0804 0.74 -2.0 880,668 - Psest_0804 0.74 -0.2 880,668 - Psest_0804 0.74 -0.1 880,668 - Psest_0804 0.74 -0.6 880,668 - Psest_0804 0.74 +6.2 880,668 - Psest_0804 0.74 -1.4 880,668 - Psest_0804 0.74 -0.1 880,668 - Psest_0804 0.74 +3.5 880,668 - Psest_0804 0.74 -2.4 880,668 - Psest_0804 0.74 +2.8 880,668 - Psest_0804 0.74 -0.9 880,668 - Psest_0804 0.74 -2.7 880,755 + Psest_0804 0.77 -1.5 880,755 + Psest_0804 0.77 -1.2 880,755 + Psest_0804 0.77 +1.8 880,844 + Psest_0804 0.80 -2.4 880,844 + Psest_0804 0.80 -2.2 880,844 + Psest_0804 0.80 -1.6 880,844 + Psest_0804 0.80 +1.6 880,844 + Psest_0804 0.80 +1.2 880,844 + Psest_0804 0.80 -0.4 880,844 + Psest_0804 0.80 -0.9 880,844 + Psest_0804 0.80 +2.7 880,844 + Psest_0804 0.80 +0.2 880,844 + Psest_0804 0.80 -0.2 880,844 + Psest_0804 0.80 +1.7 880,844 + Psest_0804 0.80 -3.7 880,844 + Psest_0804 0.80 -1.2 880,844 + Psest_0804 0.80 +1.0 880,844 + Psest_0804 0.80 -1.7 880,845 - Psest_0804 0.80 +1.7 880,845 - Psest_0804 0.80 +0.7 880,845 - Psest_0804 0.80 +1.8 880,845 - Psest_0804 0.80 +5.0 880,853 + Psest_0804 0.80 +1.6 880,853 + Psest_0804 0.80 -1.2 880,853 + Psest_0804 0.80 -1.6 880,853 + Psest_0804 0.80 +1.3 880,853 + Psest_0804 0.80 +0.6 880,853 + Psest_0804 0.80 -2.2 880,853 + Psest_0804 0.80 +0.4 880,853 + Psest_0804 0.80 -0.4 880,854 - Psest_0804 0.80 +1.6 880,854 - Psest_0804 0.80 +0.1 880,854 - Psest_0804 0.80 +1.0 880,854 - Psest_0804 0.80 +0.2 880,854 - Psest_0804 0.80 +3.6 880,889 + Psest_0804 0.82 -0.1 880,889 + Psest_0804 0.82 +0.7 880,889 + Psest_0804 0.82 +1.7 880,890 - Psest_0804 0.82 -0.0 880,890 - Psest_0804 0.82 -1.4 880,934 + Psest_0804 0.83 +0.2 880,934 + Psest_0804 0.83 +2.0 880,934 + Psest_0804 0.83 +3.0 880,934 + Psest_0804 0.83 +1.4 880,935 - Psest_0804 0.83 -1.2 880,935 - Psest_0804 0.83 +1.7 880,935 - Psest_0804 0.83 -2.5 880,935 - Psest_0804 0.83 +2.0 880,935 - Psest_0804 0.83 +1.6 881,027 + Psest_0804 0.86 -0.6 881,027 + Psest_0804 0.86 -1.1 881,027 + Psest_0804 0.86 -0.9 881,027 + Psest_0804 0.86 -2.2 881,033 + Psest_0804 0.86 -1.8 881,033 + Psest_0804 0.86 +0.4 881,033 + Psest_0804 0.86 +2.4 881,033 + Psest_0804 0.86 +2.6 881,162 + -1.4 881,162 + +0.4 881,162 + +0.8 881,163 - -1.8 881,163 - +0.0 881,203 - -1.7 881,304 + +0.8 881,305 - -1.7 881,305 - +1.0 881,451 + -0.5 881,451 + -3.4 881,624 + Psest_0805 0.33 +0.8 881,682 + Psest_0805 0.45 +3.2 881,689 + Psest_0805 0.46 +0.2 881,689 + Psest_0805 0.46 +2.2 881,689 + Psest_0805 0.46 +0.9 881,689 + Psest_0805 0.46 +2.6 881,991 + +0.8 881,992 - -0.7 881,992 - -3.5 882,048 + -1.8 882,048 + -3.0 882,048 + +2.6 882,048 + -0.9 882,048 + -1.6 882,049 - +1.0 882,049 - +0.6 882,049 - +3.9 882,049 - +0.7 882,244 - Psest_0806 0.27 +0.5 882,308 - Psest_0806 0.33 +1.7 882,308 - Psest_0806 0.33 -1.0 882,423 + Psest_0806 0.43 -1.8 882,423 + Psest_0806 0.43 -2.8 882,423 + Psest_0806 0.43 -0.2 882,423 + Psest_0806 0.43 -2.4 882,423 + Psest_0806 0.43 +1.0 882,423 + Psest_0806 0.43 -1.2 882,423 + Psest_0806 0.43 -2.4 882,424 - Psest_0806 0.43 +1.4 882,424 - Psest_0806 0.43 -2.4 882,424 - Psest_0806 0.43 +2.0 882,424 - Psest_0806 0.43 -1.7 882,424 - Psest_0806 0.43 +1.7 882,426 + Psest_0806 0.44 -1.9 882,426 + Psest_0806 0.44 -0.4
Or see this region's nucleotide sequence