Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0654 and Psest_0655 are separated by 1 nucleotides Psest_0655 and Psest_0656 are separated by 11 nucleotides Psest_0656 and Psest_0657 overlap by 22 nucleotides
Psest_0654: Psest_0654 - Methylase of chemotaxis methyl-accepting proteins, at 711,181 to 711,987
_0654
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Psest_0656: Psest_0656 - Methyl-accepting chemotaxis protein, at 712,498 to 714,144
_0656
Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369
_0657
Position (kb) 712
713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 711.559 kb on + strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.744 kb on - strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.822 kb on - strand, within Psest_0654 at 711.831 kb on - strand, within Psest_0654 at 712.419 kb on + strand, within Psest_0655 at 712.419 kb on + strand, within Psest_0655 at 712.607 kb on - strand at 712.957 kb on + strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.580 kb on - strand, within Psest_0656 at 713.580 kb on - strand, within Psest_0656 at 713.768 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.252 kb on - strand at 714.580 kb on + strand, within Psest_0657 at 714.580 kb on + strand, within Psest_0657 at 714.580 kb on + strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.929 kb on - strand, within Psest_0657
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 711,559 + Psest_0654 0.47 -3.1 711,559 + Psest_0654 0.47 -2.0 711,635 + Psest_0654 0.56 -0.4 711,635 + Psest_0654 0.56 -1.5 711,636 - Psest_0654 0.56 +0.3 711,636 - Psest_0654 0.56 +4.1 711,636 - Psest_0654 0.56 -0.5 711,743 + Psest_0654 0.70 -1.9 711,743 + Psest_0654 0.70 -2.3 711,744 - Psest_0654 0.70 +0.4 711,817 + Psest_0654 0.79 -1.7 711,817 + Psest_0654 0.79 -0.3 711,817 + Psest_0654 0.79 +0.3 711,818 - Psest_0654 0.79 +2.9 711,818 - Psest_0654 0.79 +0.1 711,818 - Psest_0654 0.79 +0.5 711,818 - Psest_0654 0.79 -1.3 711,818 - Psest_0654 0.79 +0.8 711,821 + Psest_0654 0.79 +0.6 711,821 + Psest_0654 0.79 -0.5 711,821 + Psest_0654 0.79 -0.8 711,822 - Psest_0654 0.79 -2.7 711,831 - Psest_0654 0.81 +2.3 712,419 + Psest_0655 0.86 -0.3 712,419 + Psest_0655 0.86 -0.1 712,607 - -2.2 712,957 + Psest_0656 0.28 -2.7 712,958 - Psest_0656 0.28 +0.8 712,958 - Psest_0656 0.28 -0.3 713,579 + Psest_0656 0.66 -0.6 713,579 + Psest_0656 0.66 -1.8 713,579 + Psest_0656 0.66 -2.8 713,579 + Psest_0656 0.66 -1.2 713,580 - Psest_0656 0.66 -2.0 713,580 - Psest_0656 0.66 +2.2 713,768 + Psest_0656 0.77 +0.4 713,963 + Psest_0656 0.89 -2.0 713,963 + Psest_0656 0.89 -2.6 713,963 + Psest_0656 0.89 -1.2 713,963 + Psest_0656 0.89 -0.1 713,964 - Psest_0656 0.89 -3.4 713,964 - Psest_0656 0.89 -3.2 713,964 - Psest_0656 0.89 -1.8 713,964 - Psest_0656 0.89 -2.2 714,008 + +1.4 714,008 + -0.3 714,008 + +2.4 714,008 + -1.9 714,008 + -2.5 714,252 - +3.0 714,580 + Psest_0657 0.20 -2.4 714,580 + Psest_0657 0.20 -3.3 714,580 + Psest_0657 0.20 -0.5 714,581 - Psest_0657 0.20 -0.3 714,581 - Psest_0657 0.20 +1.8 714,581 - Psest_0657 0.20 +0.2 714,581 - Psest_0657 0.20 -0.7 714,929 - Psest_0657 0.36 -0.0
Or see this region's nucleotide sequence