Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3884 and Psest_3885 are separated by 76 nucleotides Psest_3885 and Psest_3886 are separated by 12 nucleotides
Psest_3884: Psest_3884 - Signal transduction histidine kinase, at 4,053,878 to 4,055,275
_3884
Psest_3885: Psest_3885 - conserved hypothetical protein, steroid delta-isomerase-related, at 4,055,352 to 4,055,795
_3885
Psest_3886: Psest_3886 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 4,055,808 to 4,057,457
_3886
Position (kb)
4055
4056 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4055.310 kb on + strand at 4055.310 kb on + strand at 4055.311 kb on - strand at 4055.311 kb on - strand at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4056.356 kb on - strand, within Psest_3886 at 4056.474 kb on + strand, within Psest_3886 at 4056.474 kb on + strand, within Psest_3886 at 4056.475 kb on - strand, within Psest_3886 at 4056.516 kb on + strand, within Psest_3886 at 4056.517 kb on - strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 4,055,310 + -0.4 4,055,310 + +0.4 4,055,311 - -1.8 4,055,311 - +1.2 4,055,977 + Psest_3886 0.10 -0.8 4,055,977 + Psest_3886 0.10 +0.0 4,055,977 + Psest_3886 0.10 -2.4 4,055,977 + Psest_3886 0.10 +1.8 4,055,977 + Psest_3886 0.10 -0.0 4,055,977 + Psest_3886 0.10 +1.4 4,055,977 + Psest_3886 0.10 -2.8 4,055,977 + Psest_3886 0.10 +0.3 4,055,977 + Psest_3886 0.10 -1.3 4,055,977 + Psest_3886 0.10 -1.0 4,055,977 + Psest_3886 0.10 +0.5 4,055,977 + Psest_3886 0.10 -1.1 4,055,977 + Psest_3886 0.10 +1.8 4,055,977 + Psest_3886 0.10 -2.6 4,055,977 + Psest_3886 0.10 -0.8 4,055,977 + Psest_3886 0.10 +1.3 4,055,978 - Psest_3886 0.10 +1.3 4,055,978 - Psest_3886 0.10 +0.8 4,055,978 - Psest_3886 0.10 +1.8 4,055,978 - Psest_3886 0.10 -3.7 4,055,978 - Psest_3886 0.10 +2.4 4,055,978 - Psest_3886 0.10 +2.3 4,055,978 - Psest_3886 0.10 -1.3 4,055,978 - Psest_3886 0.10 -2.2 4,055,978 - Psest_3886 0.10 +0.7 4,055,978 - Psest_3886 0.10 -1.3 4,055,978 - Psest_3886 0.10 +2.9 4,055,978 - Psest_3886 0.10 +1.3 4,055,978 - Psest_3886 0.10 -0.8 4,055,978 - Psest_3886 0.10 +1.1 4,055,978 - Psest_3886 0.10 -2.2 4,055,978 - Psest_3886 0.10 -2.5 4,055,978 - Psest_3886 0.10 +1.0 4,055,978 - Psest_3886 0.10 -1.0 4,055,978 - Psest_3886 0.10 +0.8 4,055,978 - Psest_3886 0.10 +0.7 4,055,978 - Psest_3886 0.10 +0.4 4,055,978 - Psest_3886 0.10 +2.6 4,055,978 - Psest_3886 0.10 -3.6 4,055,978 - Psest_3886 0.10 -0.3 4,055,978 - Psest_3886 0.10 +1.4 4,055,978 - Psest_3886 0.10 +0.6 4,055,979 + Psest_3886 0.10 -0.2 4,055,979 + Psest_3886 0.10 -1.4 4,055,979 + Psest_3886 0.10 -1.4 4,055,979 + Psest_3886 0.10 +2.7 4,055,979 + Psest_3886 0.10 -0.7 4,055,979 + Psest_3886 0.10 -2.2 4,055,980 - Psest_3886 0.10 +1.9 4,055,980 - Psest_3886 0.10 +0.6 4,055,980 - Psest_3886 0.10 -3.3 4,056,356 - Psest_3886 0.33 -0.8 4,056,474 + Psest_3886 0.40 +2.3 4,056,474 + Psest_3886 0.40 -2.5 4,056,475 - Psest_3886 0.40 -1.1 4,056,516 + Psest_3886 0.43 +2.9 4,056,517 - Psest_3886 0.43 +2.0 4,056,658 + Psest_3886 0.52 -1.1 4,056,658 + Psest_3886 0.52 -1.1 4,056,658 + Psest_3886 0.52 +3.0 4,056,659 - Psest_3886 0.52 +3.9 4,056,659 - Psest_3886 0.52 +0.5 4,056,659 - Psest_3886 0.52 -0.3 4,056,659 - Psest_3886 0.52 +1.1 4,056,659 - Psest_3886 0.52 +0.3 4,056,659 - Psest_3886 0.52 -0.7
Or see this region's nucleotide sequence