Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3846 and Psest_3847 are separated by 100 nucleotides Psest_3847 and Psest_3848 are separated by 192 nucleotides
Psest_3846: Psest_3846 - phosphate regulon sensor kinase PhoR, at 4,017,253 to 4,018,554
_3846
Psest_3847: Psest_3847 - Hemolysins and related proteins containing CBS domains, at 4,018,655 to 4,019,998
_3847
Psest_3848: Psest_3848 - hypothetical protein, at 4,020,191 to 4,020,952
_3848
Position (kb) 4018
4019
4020 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 4017.715 kb on + strand, within Psest_3846 at 4017.733 kb on + strand, within Psest_3846 at 4017.733 kb on + strand, within Psest_3846 at 4017.733 kb on + strand, within Psest_3846 at 4017.733 kb on + strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.734 kb on - strand, within Psest_3846 at 4017.907 kb on - strand, within Psest_3846 at 4018.109 kb on + strand, within Psest_3846 at 4018.109 kb on + strand, within Psest_3846 at 4018.258 kb on + strand, within Psest_3846 at 4018.258 kb on + strand, within Psest_3846 at 4018.259 kb on - strand, within Psest_3846 at 4018.259 kb on - strand, within Psest_3846 at 4018.259 kb on - strand, within Psest_3846 at 4018.259 kb on - strand, within Psest_3846 at 4018.259 kb on - strand, within Psest_3846 at 4018.673 kb on + strand at 4018.674 kb on - strand at 4018.688 kb on + strand at 4018.688 kb on + strand at 4018.688 kb on + strand at 4018.688 kb on + strand at 4018.689 kb on - strand at 4018.689 kb on - strand at 4018.841 kb on - strand, within Psest_3847 at 4018.865 kb on + strand, within Psest_3847 at 4018.865 kb on + strand, within Psest_3847 at 4018.866 kb on - strand, within Psest_3847 at 4018.866 kb on - strand, within Psest_3847 at 4018.866 kb on - strand, within Psest_3847 at 4018.866 kb on - strand, within Psest_3847 at 4019.033 kb on + strand, within Psest_3847 at 4019.033 kb on + strand, within Psest_3847 at 4019.041 kb on + strand, within Psest_3847 at 4019.123 kb on + strand, within Psest_3847 at 4019.124 kb on - strand, within Psest_3847 at 4019.132 kb on + strand, within Psest_3847 at 4019.132 kb on + strand, within Psest_3847 at 4019.133 kb on - strand, within Psest_3847 at 4019.144 kb on + strand, within Psest_3847 at 4019.144 kb on + strand, within Psest_3847 at 4019.144 kb on + strand, within Psest_3847 at 4019.157 kb on - strand, within Psest_3847 at 4019.234 kb on + strand, within Psest_3847 at 4019.234 kb on + strand, within Psest_3847 at 4019.235 kb on - strand, within Psest_3847 at 4019.235 kb on - strand, within Psest_3847 at 4019.435 kb on + strand, within Psest_3847 at 4019.435 kb on + strand, within Psest_3847 at 4019.435 kb on + strand, within Psest_3847 at 4019.435 kb on + strand, within Psest_3847 at 4019.436 kb on - strand, within Psest_3847 at 4019.436 kb on - strand, within Psest_3847 at 4019.436 kb on - strand, within Psest_3847 at 4019.436 kb on - strand, within Psest_3847 at 4019.436 kb on - strand, within Psest_3847 at 4019.453 kb on + strand, within Psest_3847 at 4019.474 kb on + strand, within Psest_3847 at 4019.474 kb on + strand, within Psest_3847 at 4019.474 kb on + strand, within Psest_3847 at 4019.474 kb on + strand, within Psest_3847 at 4019.475 kb on - strand, within Psest_3847 at 4019.475 kb on - strand, within Psest_3847 at 4019.719 kb on + strand, within Psest_3847 at 4019.719 kb on + strand, within Psest_3847 at 4019.720 kb on - strand, within Psest_3847 at 4019.762 kb on + strand, within Psest_3847 at 4019.763 kb on - strand, within Psest_3847 at 4019.873 kb on + strand at 4019.874 kb on - strand at 4019.874 kb on - strand at 4020.010 kb on - strand at 4020.029 kb on - strand at 4020.044 kb on + strand at 4020.105 kb on - strand at 4020.114 kb on + strand at 4020.114 kb on + strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.317 kb on + strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.374 kb on + strand, within Psest_3848 at 4020.374 kb on + strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.419 kb on + strand, within Psest_3848 at 4020.420 kb on - strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.656 kb on + strand, within Psest_3848 at 4020.656 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.663 kb on - strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.684 kb on + strand, within Psest_3848 at 4020.848 kb on + strand, within Psest_3848 at 4020.848 kb on + strand, within Psest_3848 at 4020.849 kb on - strand, within Psest_3848 at 4020.849 kb on - strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.942 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.951 kb on - strand at 4020.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 4,017,715 + Psest_3846 0.35 -0.9 4,017,733 + Psest_3846 0.37 +0.4 4,017,733 + Psest_3846 0.37 +0.4 4,017,733 + Psest_3846 0.37 -2.8 4,017,733 + Psest_3846 0.37 -2.0 4,017,734 - Psest_3846 0.37 -0.1 4,017,734 - Psest_3846 0.37 -0.9 4,017,734 - Psest_3846 0.37 -1.2 4,017,734 - Psest_3846 0.37 +3.7 4,017,734 - Psest_3846 0.37 +0.9 4,017,734 - Psest_3846 0.37 +3.4 4,017,734 - Psest_3846 0.37 +3.1 4,017,907 - Psest_3846 0.50 +1.3 4,018,109 + Psest_3846 0.66 -1.1 4,018,109 + Psest_3846 0.66 -0.0 4,018,258 + Psest_3846 0.77 -0.7 4,018,258 + Psest_3846 0.77 +0.4 4,018,259 - Psest_3846 0.77 +0.8 4,018,259 - Psest_3846 0.77 -1.6 4,018,259 - Psest_3846 0.77 +1.6 4,018,259 - Psest_3846 0.77 +2.4 4,018,259 - Psest_3846 0.77 -2.3 4,018,673 + +2.0 4,018,674 - +0.7 4,018,688 + +1.5 4,018,688 + +0.9 4,018,688 + +2.1 4,018,688 + +2.0 4,018,689 - +5.8 4,018,689 - -2.4 4,018,841 - Psest_3847 0.14 -0.1 4,018,865 + Psest_3847 0.16 +0.3 4,018,865 + Psest_3847 0.16 +0.6 4,018,866 - Psest_3847 0.16 -1.4 4,018,866 - Psest_3847 0.16 -1.7 4,018,866 - Psest_3847 0.16 +1.5 4,018,866 - Psest_3847 0.16 +1.0 4,019,033 + Psest_3847 0.28 -0.5 4,019,033 + Psest_3847 0.28 +4.2 4,019,041 + Psest_3847 0.29 +1.0 4,019,123 + Psest_3847 0.35 +2.8 4,019,124 - Psest_3847 0.35 +1.3 4,019,132 + Psest_3847 0.35 -1.9 4,019,132 + Psest_3847 0.35 -0.7 4,019,133 - Psest_3847 0.36 +0.7 4,019,144 + Psest_3847 0.36 -2.5 4,019,144 + Psest_3847 0.36 -0.3 4,019,144 + Psest_3847 0.36 -1.1 4,019,157 - Psest_3847 0.37 +5.5 4,019,234 + Psest_3847 0.43 -0.8 4,019,234 + Psest_3847 0.43 +1.7 4,019,235 - Psest_3847 0.43 +2.7 4,019,235 - Psest_3847 0.43 +2.3 4,019,435 + Psest_3847 0.58 -3.5 4,019,435 + Psest_3847 0.58 -1.3 4,019,435 + Psest_3847 0.58 -1.6 4,019,435 + Psest_3847 0.58 +1.7 4,019,436 - Psest_3847 0.58 -2.4 4,019,436 - Psest_3847 0.58 -1.8 4,019,436 - Psest_3847 0.58 +0.4 4,019,436 - Psest_3847 0.58 -1.6 4,019,436 - Psest_3847 0.58 +0.1 4,019,453 + Psest_3847 0.59 -1.0 4,019,474 + Psest_3847 0.61 +0.2 4,019,474 + Psest_3847 0.61 +1.7 4,019,474 + Psest_3847 0.61 -1.1 4,019,474 + Psest_3847 0.61 +0.9 4,019,475 - Psest_3847 0.61 +4.0 4,019,475 - Psest_3847 0.61 +0.6 4,019,719 + Psest_3847 0.79 -3.0 4,019,719 + Psest_3847 0.79 +0.8 4,019,720 - Psest_3847 0.79 +0.9 4,019,762 + Psest_3847 0.82 +3.3 4,019,763 - Psest_3847 0.82 +1.5 4,019,873 + -0.5 4,019,874 - -1.3 4,019,874 - +2.4 4,020,010 - -1.6 4,020,029 - +0.4 4,020,044 + -2.0 4,020,105 - -0.0 4,020,114 + +2.4 4,020,114 + -2.2 4,020,115 - -1.4 4,020,115 - -0.4 4,020,115 - -0.2 4,020,115 - +2.8 4,020,115 - +0.7 4,020,115 - -1.8 4,020,317 + Psest_3848 0.17 +1.9 4,020,318 - Psest_3848 0.17 +2.7 4,020,318 - Psest_3848 0.17 -0.1 4,020,318 - Psest_3848 0.17 -0.7 4,020,318 - Psest_3848 0.17 +0.3 4,020,374 + Psest_3848 0.24 +1.3 4,020,374 + Psest_3848 0.24 -0.2 4,020,375 - Psest_3848 0.24 -4.4 4,020,375 - Psest_3848 0.24 +0.4 4,020,375 - Psest_3848 0.24 +0.7 4,020,377 + Psest_3848 0.24 -1.0 4,020,377 + Psest_3848 0.24 -1.6 4,020,377 + Psest_3848 0.24 -0.3 4,020,377 + Psest_3848 0.24 -1.4 4,020,377 + Psest_3848 0.24 -2.6 4,020,377 + Psest_3848 0.24 +3.0 4,020,377 + Psest_3848 0.24 +2.9 4,020,378 - Psest_3848 0.25 -1.6 4,020,378 - Psest_3848 0.25 +0.3 4,020,378 - Psest_3848 0.25 -1.7 4,020,378 - Psest_3848 0.25 -1.3 4,020,378 - Psest_3848 0.25 +3.3 4,020,378 - Psest_3848 0.25 -0.0 4,020,378 - Psest_3848 0.25 +1.1 4,020,378 - Psest_3848 0.25 -1.4 4,020,378 - Psest_3848 0.25 +1.0 4,020,419 + Psest_3848 0.30 +2.4 4,020,420 - Psest_3848 0.30 +0.4 4,020,467 + Psest_3848 0.36 +0.9 4,020,467 + Psest_3848 0.36 +1.5 4,020,467 + Psest_3848 0.36 +0.4 4,020,467 + Psest_3848 0.36 -1.1 4,020,467 + Psest_3848 0.36 -0.7 4,020,467 + Psest_3848 0.36 -0.9 4,020,467 + Psest_3848 0.36 -1.1 4,020,467 + Psest_3848 0.36 +2.5 4,020,467 + Psest_3848 0.36 +0.3 4,020,467 + Psest_3848 0.36 +0.9 4,020,467 + Psest_3848 0.36 -1.1 4,020,467 + Psest_3848 0.36 +2.7 4,020,467 + Psest_3848 0.36 -0.7 4,020,467 + Psest_3848 0.36 +0.7 4,020,468 - Psest_3848 0.36 +1.3 4,020,468 - Psest_3848 0.36 -1.6 4,020,468 - Psest_3848 0.36 +0.9 4,020,468 - Psest_3848 0.36 -0.9 4,020,468 - Psest_3848 0.36 -1.5 4,020,468 - Psest_3848 0.36 +3.6 4,020,468 - Psest_3848 0.36 -0.6 4,020,468 - Psest_3848 0.36 -2.7 4,020,468 - Psest_3848 0.36 -0.4 4,020,468 - Psest_3848 0.36 +0.3 4,020,468 - Psest_3848 0.36 -1.3 4,020,468 - Psest_3848 0.36 -1.7 4,020,468 - Psest_3848 0.36 -0.7 4,020,468 - Psest_3848 0.36 +1.8 4,020,468 - Psest_3848 0.36 +1.6 4,020,468 - Psest_3848 0.36 +0.7 4,020,468 - Psest_3848 0.36 +3.6 4,020,527 + Psest_3848 0.44 +2.8 4,020,527 + Psest_3848 0.44 -1.5 4,020,527 + Psest_3848 0.44 +1.7 4,020,527 + Psest_3848 0.44 +0.7 4,020,527 + Psest_3848 0.44 +1.2 4,020,527 + Psest_3848 0.44 -2.3 4,020,527 + Psest_3848 0.44 +2.2 4,020,527 + Psest_3848 0.44 -1.9 4,020,527 + Psest_3848 0.44 -2.4 4,020,527 + Psest_3848 0.44 -2.0 4,020,527 + Psest_3848 0.44 +0.8 4,020,527 + Psest_3848 0.44 +1.2 4,020,527 + Psest_3848 0.44 +0.4 4,020,527 + Psest_3848 0.44 +0.1 4,020,527 + Psest_3848 0.44 +1.0 4,020,528 - Psest_3848 0.44 +0.1 4,020,528 - Psest_3848 0.44 +2.3 4,020,528 - Psest_3848 0.44 -0.7 4,020,528 - Psest_3848 0.44 -0.1 4,020,528 - Psest_3848 0.44 -0.6 4,020,528 - Psest_3848 0.44 -0.3 4,020,528 - Psest_3848 0.44 +0.1 4,020,528 - Psest_3848 0.44 +0.3 4,020,528 - Psest_3848 0.44 -2.1 4,020,528 - Psest_3848 0.44 +0.7 4,020,528 - Psest_3848 0.44 -2.2 4,020,528 - Psest_3848 0.44 +1.4 4,020,528 - Psest_3848 0.44 -2.3 4,020,528 - Psest_3848 0.44 +0.9 4,020,656 + Psest_3848 0.61 +0.0 4,020,656 + Psest_3848 0.61 +1.4 4,020,662 + Psest_3848 0.62 -2.4 4,020,662 + Psest_3848 0.62 +1.0 4,020,662 + Psest_3848 0.62 -1.6 4,020,662 + Psest_3848 0.62 +6.0 4,020,662 + Psest_3848 0.62 -2.8 4,020,662 + Psest_3848 0.62 +0.2 4,020,662 + Psest_3848 0.62 +0.0 4,020,662 + Psest_3848 0.62 +2.3 4,020,663 - Psest_3848 0.62 +1.0 4,020,677 + Psest_3848 0.64 +2.1 4,020,677 + Psest_3848 0.64 +0.6 4,020,677 + Psest_3848 0.64 -0.5 4,020,684 + Psest_3848 0.65 -1.8 4,020,848 + Psest_3848 0.86 -2.6 4,020,848 + Psest_3848 0.86 -0.0 4,020,849 - Psest_3848 0.86 -2.0 4,020,849 - Psest_3848 0.86 -1.6 4,020,851 + Psest_3848 0.87 -1.3 4,020,851 + Psest_3848 0.87 -3.0 4,020,851 + Psest_3848 0.87 -0.9 4,020,851 + Psest_3848 0.87 +2.4 4,020,851 + Psest_3848 0.87 +0.4 4,020,851 + Psest_3848 0.87 -2.4 4,020,851 + Psest_3848 0.87 -1.7 4,020,851 + Psest_3848 0.87 -0.3 4,020,851 + Psest_3848 0.87 -0.9 4,020,852 - Psest_3848 0.87 -1.6 4,020,852 - Psest_3848 0.87 +0.5 4,020,852 - Psest_3848 0.87 -0.4 4,020,852 - Psest_3848 0.87 +2.8 4,020,852 - Psest_3848 0.87 -0.4 4,020,852 - Psest_3848 0.87 -0.4 4,020,942 + -0.7 4,020,950 + +1.6 4,020,950 + -2.6 4,020,950 + +1.7 4,020,950 + -3.5 4,020,950 + -0.3 4,020,950 + +0.6 4,020,950 + -1.3 4,020,951 - +2.3 4,020,951 - -0.9
Or see this region's nucleotide sequence