Experiment: RCH2 grown on a colony of Serratia
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0360 and Psest_0361 are separated by 223 nucleotides Psest_0361 and Psest_0362 overlap by 1 nucleotides Psest_0362 and Psest_0363 are separated by 58 nucleotides
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 386.566 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.284 kb on - strand at 387.333 kb on - strand at 387.383 kb on + strand at 387.383 kb on + strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.424 kb on - strand at 387.432 kb on - strand at 387.432 kb on - strand at 387.505 kb on + strand at 387.505 kb on + strand at 387.538 kb on - strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.575 kb on + strand at 387.575 kb on + strand at 387.596 kb on - strand at 387.596 kb on - strand at 387.664 kb on - strand, within Psest_0361 at 387.836 kb on + strand, within Psest_0361 at 387.905 kb on + strand, within Psest_0361 at 387.906 kb on - strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.181 kb on + strand, within Psest_0361 at 388.182 kb on - strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.346 kb on - strand, within Psest_0361 at 388.729 kb on + strand at 388.810 kb on + strand at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.904 kb on - strand, within Psest_0362 at 388.942 kb on + strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.972 kb on + strand, within Psest_0362 at 389.266 kb on + strand at 389.267 kb on - strand at 389.286 kb on + strand at 389.287 kb on - strand at 389.411 kb on + strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.441 kb on + strand at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of Serratia remove 386,566 + Psest_0360 0.22 +1.9 386,676 + Psest_0360 0.34 +2.9 386,676 + Psest_0360 0.34 +1.9 386,676 + Psest_0360 0.34 -0.9 386,676 + Psest_0360 0.34 +3.9 386,677 - Psest_0360 0.34 -1.4 386,677 - Psest_0360 0.34 -1.1 386,677 - Psest_0360 0.34 -0.7 386,677 - Psest_0360 0.34 +0.5 386,677 - Psest_0360 0.34 -2.2 386,677 - Psest_0360 0.34 +0.3 387,005 - Psest_0360 0.70 +1.0 387,005 - Psest_0360 0.70 +3.1 387,005 - Psest_0360 0.70 -0.2 387,005 - Psest_0360 0.70 +0.1 387,005 - Psest_0360 0.70 -1.7 387,005 - Psest_0360 0.70 -2.3 387,005 - Psest_0360 0.70 +2.4 387,154 - Psest_0360 0.87 -0.2 387,154 - Psest_0360 0.87 +1.3 387,154 - Psest_0360 0.87 +0.9 387,284 - -2.1 387,333 - -3.0 387,383 + +1.8 387,383 + -1.0 387,392 - +0.9 387,392 - +0.9 387,392 - -1.6 387,424 - +0.8 387,432 - -1.4 387,432 - -1.4 387,505 + +0.1 387,505 + +1.1 387,538 - -0.7 387,539 + +0.4 387,539 + +1.1 387,539 + -1.1 387,539 + -0.5 387,539 + -0.3 387,539 + +2.0 387,539 + -0.9 387,539 + -0.5 387,539 + -2.2 387,539 + +0.5 387,539 + -0.2 387,539 + -3.7 387,539 + -0.7 387,539 + +1.1 387,539 + +0.8 387,539 + +1.4 387,540 - -2.7 387,540 - +3.7 387,540 - +2.2 387,540 - -1.6 387,540 - +1.3 387,540 - +0.0 387,540 - -2.8 387,540 - -1.2 387,540 - +0.2 387,540 - -1.0 387,540 - -1.5 387,540 - +0.6 387,540 - -4.0 387,540 - +1.8 387,540 - -1.1 387,575 + +0.2 387,575 + -1.2 387,596 - -1.6 387,596 - +0.8 387,664 - Psest_0361 0.13 -3.2 387,836 + Psest_0361 0.27 +0.1 387,905 + Psest_0361 0.32 +0.8 387,906 - Psest_0361 0.32 +0.0 387,998 + Psest_0361 0.39 -0.2 387,998 + Psest_0361 0.39 +0.2 387,999 - Psest_0361 0.39 -1.6 387,999 - Psest_0361 0.39 +0.1 387,999 - Psest_0361 0.39 -1.4 387,999 - Psest_0361 0.39 +1.4 388,007 + Psest_0361 0.40 -1.7 388,007 + Psest_0361 0.40 -2.7 388,165 + Psest_0361 0.52 +1.7 388,165 + Psest_0361 0.52 -1.2 388,165 + Psest_0361 0.52 -1.4 388,165 + Psest_0361 0.52 +1.3 388,165 + Psest_0361 0.52 +0.0 388,165 + Psest_0361 0.52 -1.7 388,166 - Psest_0361 0.52 +1.5 388,166 - Psest_0361 0.52 +0.9 388,166 - Psest_0361 0.52 -2.2 388,166 - Psest_0361 0.52 -1.9 388,166 - Psest_0361 0.52 +1.6 388,166 - Psest_0361 0.52 +0.7 388,166 - Psest_0361 0.52 +0.8 388,181 + Psest_0361 0.53 -1.6 388,182 - Psest_0361 0.54 -1.8 388,304 + Psest_0361 0.63 -1.4 388,304 + Psest_0361 0.63 +0.9 388,304 + Psest_0361 0.63 +1.3 388,304 + Psest_0361 0.63 -1.7 388,304 + Psest_0361 0.63 +1.1 388,304 + Psest_0361 0.63 +1.6 388,304 + Psest_0361 0.63 -2.1 388,304 + Psest_0361 0.63 -1.7 388,305 - Psest_0361 0.63 -0.4 388,305 - Psest_0361 0.63 +1.9 388,346 - Psest_0361 0.66 -1.0 388,729 + -3.0 388,810 + -0.3 388,843 + Psest_0362 0.13 -1.2 388,843 + Psest_0362 0.13 -1.2 388,843 + Psest_0362 0.13 -1.1 388,903 + Psest_0362 0.24 +3.8 388,903 + Psest_0362 0.24 -0.1 388,904 - Psest_0362 0.24 -0.7 388,942 + Psest_0362 0.31 +2.9 388,943 - Psest_0362 0.32 -1.3 388,943 - Psest_0362 0.32 +2.3 388,972 + Psest_0362 0.37 -0.4 389,266 + +2.5 389,267 - -0.8 389,286 + -1.1 389,287 - -2.1 389,411 + -1.6 389,412 - -2.5 389,412 - +2.6 389,412 - -0.2 389,441 + +0.8 389,657 + Psest_0363 0.30 +2.3 389,657 + Psest_0363 0.30 -1.4 389,657 + Psest_0363 0.30 +1.0 389,658 - Psest_0363 0.30 +2.6 389,658 - Psest_0363 0.30 +3.0 389,658 - Psest_0363 0.30 -1.4 389,658 - Psest_0363 0.30 -1.2
Or see this region's nucleotide sequence