Experiment: RCH2 grown on a colony of ecoli
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0779 and Psest_0780 overlap by 1 nucleotides Psest_0780 and Psest_0781 are separated by 227 nucleotides Psest_0781 and Psest_0782 are separated by 250 nucleotides
Psest_0779: Psest_0779 - tyrosine aminotransferase (EC 2.6.1.57) <small>(from data)</small>, at 847,835 to 849,031
_0779
Psest_0780: Psest_0780 - Pterin-4a-carbinolamine dehydratase, at 849,031 to 849,387
_0780
Psest_0781: Psest_0781 - phenylalanine-4-hydroxylase, monomeric form, at 849,615 to 850,400
_0781
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Position (kb) 849
850
851 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 848.835 kb on + strand, within Psest_0779 at 848.835 kb on + strand, within Psest_0779 at 848.836 kb on - strand, within Psest_0779 at 849.032 kb on + strand at 849.032 kb on + strand at 849.032 kb on + strand at 849.033 kb on - strand at 849.422 kb on + strand at 849.423 kb on - strand at 849.423 kb on - strand at 849.423 kb on - strand at 849.458 kb on - strand at 849.480 kb on + strand at 849.480 kb on + strand at 849.481 kb on - strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.525 kb on - strand at 849.525 kb on - strand at 849.616 kb on + strand at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.764 kb on - strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.977 kb on - strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.089 kb on - strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.265 kb on - strand, within Psest_0781 at 850.380 kb on + strand at 850.380 kb on + strand at 850.404 kb on + strand at 850.457 kb on + strand at 850.457 kb on + strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.568 kb on + strand at 850.580 kb on - strand at 850.656 kb on + strand at 850.656 kb on + strand at 850.720 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.947 kb on + strand, within Psest_0782 at 851.190 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli remove 848,835 + Psest_0779 0.84 -2.6 848,835 + Psest_0779 0.84 +0.5 848,836 - Psest_0779 0.84 -2.5 849,032 + +1.1 849,032 + +1.7 849,032 + -1.6 849,033 - -1.2 849,422 + -3.8 849,423 - +0.8 849,423 - +1.5 849,423 - -3.3 849,458 - +0.4 849,480 + -2.5 849,480 + -1.4 849,481 - +1.0 849,524 + -1.8 849,524 + -2.1 849,524 + -3.0 849,524 + -2.1 849,524 + -1.2 849,525 - -0.2 849,525 - -0.0 849,616 + +1.8 849,736 + Psest_0781 0.15 -3.2 849,736 + Psest_0781 0.15 +0.4 849,736 + Psest_0781 0.15 -0.8 849,736 + Psest_0781 0.15 +0.9 849,736 + Psest_0781 0.15 -1.9 849,737 - Psest_0781 0.16 -0.7 849,737 - Psest_0781 0.16 -1.1 849,737 - Psest_0781 0.16 +2.8 849,737 - Psest_0781 0.16 -0.0 849,764 - Psest_0781 0.19 -0.1 849,826 + Psest_0781 0.27 -0.2 849,826 + Psest_0781 0.27 -1.2 849,826 + Psest_0781 0.27 +2.3 849,826 + Psest_0781 0.27 -2.1 849,827 - Psest_0781 0.27 -0.5 849,827 - Psest_0781 0.27 -0.3 849,865 + Psest_0781 0.32 -2.0 849,865 + Psest_0781 0.32 -2.8 849,934 + Psest_0781 0.41 -3.1 849,934 + Psest_0781 0.41 -1.3 849,935 - Psest_0781 0.41 +0.8 849,935 - Psest_0781 0.41 -1.5 849,935 - Psest_0781 0.41 +2.2 849,977 - Psest_0781 0.46 -1.0 850,063 + Psest_0781 0.57 -2.1 850,063 + Psest_0781 0.57 -0.2 850,063 + Psest_0781 0.57 -2.0 850,089 - Psest_0781 0.60 -3.7 850,264 + Psest_0781 0.83 -1.8 850,264 + Psest_0781 0.83 -1.8 850,265 - Psest_0781 0.83 -1.7 850,380 + +2.1 850,380 + -2.1 850,404 + +2.8 850,457 + -1.1 850,457 + +0.5 850,458 - -0.8 850,458 - -0.9 850,458 - +0.2 850,568 + -2.5 850,580 - -1.5 850,656 + -0.1 850,656 + +0.3 850,720 + +0.2 850,774 + -2.2 850,774 + +0.4 850,774 + -0.5 850,774 + +1.2 850,775 - -1.0 850,775 - +2.4 850,775 - +1.2 850,947 + Psest_0782 0.19 -1.0 851,190 - Psest_0782 0.35 +0.6 851,231 - Psest_0782 0.37 -1.4 851,231 - Psest_0782 0.37 -2.2
Or see this region's nucleotide sequence