Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0723

Experiment: RCH2 grown on a colony of ecoli

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0722 and Psest_0723 are separated by 153 nucleotidesPsest_0723 and Psest_0724 are separated by 156 nucleotidesPsest_0724 and Psest_0725 are separated by 104 nucleotides Psest_0722: Psest_0722 - Predicted ATPase, at 791,391 to 792,563 _0722 Psest_0723: Psest_0723 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 792,717 to 793,706 _0723 Psest_0724: Psest_0724 - Deoxyinosine 3'endonuclease (endonuclease V), at 793,863 to 794,591 _0724 Psest_0725: Psest_0725 - Negative regulator of beta-lactamase expression, at 794,696 to 795,247 _0725 Position (kb) 792 793 794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 791.976 kb on + strand, within Psest_0722at 791.976 kb on + strand, within Psest_0722at 791.977 kb on - strand, within Psest_0722at 791.977 kb on - strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.412 kb on - strand, within Psest_0722at 792.465 kb on + strandat 792.465 kb on + strandat 792.465 kb on + strandat 792.465 kb on + strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.538 kb on - strandat 792.650 kb on - strandat 792.719 kb on - strandat 792.733 kb on + strandat 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.821 kb on - strand, within Psest_0723at 792.821 kb on - strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 793.088 kb on - strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.208 kb on - strand, within Psest_0723at 793.671 kb on + strandat 793.672 kb on - strandat 793.672 kb on - strandat 793.714 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.718 kb on + strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 793.719 kb on - strandat 794.008 kb on - strand, within Psest_0724at 794.121 kb on + strand, within Psest_0724at 794.121 kb on + strand, within Psest_0724at 794.121 kb on + strand, within Psest_0724at 794.121 kb on + strand, within Psest_0724at 794.122 kb on - strand, within Psest_0724at 794.122 kb on - strand, within Psest_0724at 794.266 kb on + strand, within Psest_0724at 794.395 kb on + strand, within Psest_0724at 794.605 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli
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791,976 + Psest_0722 0.50 -0.8
791,976 + Psest_0722 0.50 +0.2
791,977 - Psest_0722 0.50 -0.8
791,977 - Psest_0722 0.50 -0.2
792,300 + Psest_0722 0.77 +0.2
792,300 + Psest_0722 0.77 +0.2
792,300 + Psest_0722 0.77 +1.8
792,300 + Psest_0722 0.77 -0.8
792,300 + Psest_0722 0.77 -1.0
792,301 - Psest_0722 0.78 -0.2
792,301 - Psest_0722 0.78 +1.2
792,301 - Psest_0722 0.78 +0.2
792,301 - Psest_0722 0.78 -1.5
792,301 - Psest_0722 0.78 -0.5
792,301 - Psest_0722 0.78 -1.0
792,301 - Psest_0722 0.78 +0.8
792,301 - Psest_0722 0.78 +1.8
792,412 - Psest_0722 0.87 -0.5
792,465 + -0.5
792,465 + -1.0
792,465 + -1.4
792,465 + +1.8
792,466 - +2.2
792,466 - +0.2
792,538 - -2.5
792,650 - +0.8
792,719 - -2.0
792,733 + -4.3
792,820 + Psest_0723 0.10 -0.5
792,820 + Psest_0723 0.10 +1.1
792,820 + Psest_0723 0.10 +4.1
792,820 + Psest_0723 0.10 -3.0
792,821 - Psest_0723 0.11 +0.8
792,821 - Psest_0723 0.11 +0.3
792,891 + Psest_0723 0.18 +1.5
792,891 + Psest_0723 0.18 +0.2
792,891 + Psest_0723 0.18 +1.8
792,892 - Psest_0723 0.18 -1.6
792,892 - Psest_0723 0.18 +1.1
792,892 - Psest_0723 0.18 -1.2
792,892 - Psest_0723 0.18 -0.0
792,892 - Psest_0723 0.18 -0.8
792,892 - Psest_0723 0.18 -1.8
792,896 - Psest_0723 0.18 +0.2
792,896 - Psest_0723 0.18 +1.8
792,896 - Psest_0723 0.18 +1.7
793,088 - Psest_0723 0.37 +0.6
793,165 + Psest_0723 0.45 -0.3
793,165 + Psest_0723 0.45 -0.8
793,165 + Psest_0723 0.45 -0.2
793,165 + Psest_0723 0.45 -2.3
793,166 - Psest_0723 0.45 -1.6
793,166 - Psest_0723 0.45 -1.7
793,166 - Psest_0723 0.45 -2.0
793,166 - Psest_0723 0.45 +1.8
793,166 - Psest_0723 0.45 +1.1
793,171 + Psest_0723 0.46 -0.2
793,171 + Psest_0723 0.46 -2.6
793,171 + Psest_0723 0.46 -0.2
793,171 + Psest_0723 0.46 -2.0
793,171 + Psest_0723 0.46 -2.3
793,171 + Psest_0723 0.46 +0.1
793,171 + Psest_0723 0.46 +0.8
793,171 + Psest_0723 0.46 -1.7
793,171 + Psest_0723 0.46 -1.3
793,171 + Psest_0723 0.46 -1.2
793,171 + Psest_0723 0.46 +0.3
793,171 + Psest_0723 0.46 -1.2
793,171 + Psest_0723 0.46 -0.3
793,171 + Psest_0723 0.46 -2.4
793,171 + Psest_0723 0.46 +1.2
793,171 + Psest_0723 0.46 -1.5
793,171 + Psest_0723 0.46 -2.4
793,171 + Psest_0723 0.46 -1.4
793,172 - Psest_0723 0.46 -2.0
793,172 - Psest_0723 0.46 +0.8
793,172 - Psest_0723 0.46 -1.7
793,172 - Psest_0723 0.46 -0.2
793,172 - Psest_0723 0.46 -0.3
793,172 - Psest_0723 0.46 +1.0
793,208 - Psest_0723 0.50 +0.7
793,671 + -1.7
793,672 - +0.5
793,672 - -1.6
793,714 + -0.8
793,718 + -0.4
793,718 + +1.1
793,718 + -2.7
793,718 + -1.3
793,718 + -2.8
793,718 + -2.0
793,718 + +0.5
793,718 + -3.8
793,718 + -1.6
793,718 + -1.0
793,719 - -1.5
793,719 - +1.8
793,719 - -1.5
793,719 - -1.1
793,719 - +2.2
793,719 - +3.7
793,719 - -1.4
793,719 - -2.3
794,008 - Psest_0724 0.20 +1.6
794,121 + Psest_0724 0.35 -0.8
794,121 + Psest_0724 0.35 +2.1
794,121 + Psest_0724 0.35 +1.2
794,121 + Psest_0724 0.35 +0.4
794,122 - Psest_0724 0.36 -1.7
794,122 - Psest_0724 0.36 -2.3
794,266 + Psest_0724 0.55 +1.7
794,395 + Psest_0724 0.73 -0.6
794,605 + -1.2

Or see this region's nucleotide sequence