Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0573

Experiment: RCH2 grown on a colony of ecoli

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0571 and Psest_0573 are separated by 544 nucleotidesPsest_0573 and Psest_0574 are separated by 25 nucleotidesPsest_0574 and Psest_0575 are separated by 156 nucleotides Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086 _0571 Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521 _0573 Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963 _0574 Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584 _0575 Position (kb) 627 628 629Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 626.764 kb on + strand, within Psest_0571at 626.765 kb on - strand, within Psest_0571at 626.881 kb on + strand, within Psest_0571at 626.939 kb on + strand, within Psest_0571at 626.940 kb on - strand, within Psest_0571at 626.940 kb on - strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strandat 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 627.129 kb on - strandat 627.131 kb on + strandat 627.157 kb on + strandat 627.157 kb on + strandat 627.206 kb on + strandat 627.207 kb on - strandat 627.207 kb on - strandat 627.274 kb on + strandat 627.360 kb on + strandat 627.360 kb on + strandat 627.361 kb on - strandat 627.528 kb on + strandat 627.529 kb on - strandat 627.529 kb on - strandat 627.804 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 628.055 kb on + strand, within Psest_0573at 628.115 kb on + strand, within Psest_0573at 628.116 kb on - strand, within Psest_0573at 628.492 kb on - strandat 628.533 kb on - strandat 628.731 kb on + strand, within Psest_0574at 628.732 kb on - strand, within Psest_0574at 628.732 kb on - strand, within Psest_0574at 628.749 kb on + strand, within Psest_0574at 628.750 kb on - strand, within Psest_0574at 628.750 kb on - strand, within Psest_0574at 628.750 kb on - strand, within Psest_0574at 628.750 kb on - strand, within Psest_0574at 628.750 kb on - strand, within Psest_0574at 628.803 kb on + strand, within Psest_0574at 628.803 kb on + strand, within Psest_0574at 628.803 kb on + strand, within Psest_0574at 628.803 kb on + strand, within Psest_0574at 628.803 kb on + strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.804 kb on - strand, within Psest_0574at 628.836 kb on - strand, within Psest_0574at 628.836 kb on - strand, within Psest_0574at 628.957 kb on + strandat 628.957 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.992 kb on + strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.993 kb on - strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.994 kb on + strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 628.995 kb on - strandat 629.092 kb on - strandat 629.092 kb on - strandat 629.092 kb on - strandat 629.094 kb on - strandat 629.094 kb on - strandat 629.094 kb on - strandat 629.094 kb on - strandat 629.094 kb on - strandat 629.130 kb on + strandat 629.131 kb on - strandat 629.131 kb on - strandat 629.131 kb on - strandat 629.131 kb on - strandat 629.135 kb on - strandat 629.135 kb on - strandat 629.508 kb on + strand, within Psest_0575

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli
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626,764 + Psest_0571 0.33 -1.4
626,765 - Psest_0571 0.33 +0.5
626,881 + Psest_0571 0.57 +4.0
626,939 + Psest_0571 0.69 +2.6
626,940 - Psest_0571 0.69 +1.2
626,940 - Psest_0571 0.69 -2.4
626,941 + Psest_0571 0.70 +0.6
626,941 + Psest_0571 0.70 +0.6
626,941 + +1.1
626,941 + Psest_0571 0.70 -2.3
626,941 + Psest_0571 0.70 -0.0
626,941 + Psest_0571 0.70 -2.1
626,941 + Psest_0571 0.70 -0.9
626,941 + Psest_0571 0.70 -0.7
626,942 - Psest_0571 0.70 +0.6
626,942 - Psest_0571 0.70 +1.8
626,942 - Psest_0571 0.70 -2.8
626,942 - Psest_0571 0.70 -2.5
626,942 - Psest_0571 0.70 +1.3
627,129 - +1.6
627,131 + -2.1
627,157 + -0.8
627,157 + +5.4
627,206 + -3.3
627,207 - +1.9
627,207 - -1.7
627,274 + -0.1
627,360 + +0.3
627,360 + +1.1
627,361 - -0.2
627,528 + +1.0
627,529 - -1.0
627,529 - +0.3
627,804 + Psest_0573 0.19 -2.1
627,950 + Psest_0573 0.36 -0.5
627,950 + Psest_0573 0.36 +2.3
627,950 + Psest_0573 0.36 +1.5
627,950 + Psest_0573 0.36 -2.7
627,950 + Psest_0573 0.36 -0.7
627,950 + Psest_0573 0.36 -2.2
627,951 - Psest_0573 0.36 +1.1
627,951 - Psest_0573 0.36 -1.0
627,951 - Psest_0573 0.36 +2.2
627,951 - Psest_0573 0.36 +1.8
627,951 - Psest_0573 0.36 +0.2
627,951 - Psest_0573 0.36 +0.6
627,951 - Psest_0573 0.36 +2.0
628,055 + Psest_0573 0.48 +0.9
628,115 + Psest_0573 0.54 +1.2
628,116 - Psest_0573 0.54 +2.9
628,492 - -0.2
628,533 - +2.8
628,731 + Psest_0574 0.44 +0.1
628,732 - Psest_0574 0.44 +0.0
628,732 - Psest_0574 0.44 -0.1
628,749 + Psest_0574 0.48 -2.7
628,750 - Psest_0574 0.49 -1.6
628,750 - Psest_0574 0.49 -0.5
628,750 - Psest_0574 0.49 +0.1
628,750 - Psest_0574 0.49 -0.5
628,750 - Psest_0574 0.49 -0.1
628,803 + Psest_0574 0.61 -0.4
628,803 + Psest_0574 0.61 -1.4
628,803 + Psest_0574 0.61 +1.2
628,803 + Psest_0574 0.61 -2.4
628,803 + Psest_0574 0.61 -2.2
628,804 - Psest_0574 0.62 -2.1
628,804 - Psest_0574 0.62 -1.3
628,804 - Psest_0574 0.62 -1.5
628,804 - Psest_0574 0.62 +2.3
628,804 - Psest_0574 0.62 +1.0
628,804 - Psest_0574 0.62 +2.5
628,804 - Psest_0574 0.62 +0.9
628,804 - Psest_0574 0.62 -1.4
628,804 - Psest_0574 0.62 +3.3
628,804 - Psest_0574 0.62 +1.3
628,804 - Psest_0574 0.62 -0.3
628,804 - Psest_0574 0.62 +0.7
628,836 - Psest_0574 0.69 +0.3
628,836 - Psest_0574 0.69 +0.3
628,957 + -1.5
628,957 + +0.4
628,992 + -1.1
628,992 + -2.8
628,992 + -2.5
628,992 + +0.0
628,992 + +0.4
628,992 + -0.3
628,992 + -1.0
628,992 + +0.7
628,992 + -2.7
628,992 + -2.3
628,992 + -2.5
628,992 + +0.5
628,992 + -0.6
628,992 + -0.5
628,992 + +0.1
628,992 + -2.1
628,992 + +2.4
628,992 + -0.8
628,993 - -1.9
628,993 - +1.4
628,993 - -2.2
628,993 - -1.6
628,993 - +0.4
628,993 - -1.7
628,993 - -4.1
628,993 - -0.7
628,993 - +0.7
628,994 + -1.9
628,994 + -2.1
628,994 + -1.0
628,994 + +3.8
628,994 + -1.1
628,994 + -2.8
628,994 + +3.6
628,994 + -0.2
628,994 + -1.5
628,994 + +1.9
628,994 + -1.1
628,994 + -1.9
628,994 + -1.8
628,994 + +1.4
628,994 + -1.7
628,994 + -1.6
628,994 + +1.2
628,994 + +1.0
628,994 + -1.1
628,994 + +2.9
628,994 + +1.5
628,995 - +0.3
628,995 - +0.1
628,995 - +1.4
628,995 - -1.7
628,995 - -0.1
628,995 - +2.7
628,995 - -0.7
628,995 - +0.2
628,995 - -2.9
628,995 - +0.9
628,995 - -2.9
628,995 - -0.7
628,995 - -1.5
628,995 - -1.6
628,995 - -1.5
628,995 - -0.9
628,995 - -2.3
628,995 - +1.8
628,995 - -3.9
628,995 - +1.1
628,995 - -1.3
628,995 - -1.4
628,995 - -1.1
628,995 - +0.6
628,995 - -0.1
628,995 - -0.7
628,995 - -1.6
628,995 - -1.3
628,995 - -2.0
628,995 - -1.8
628,995 - -0.4
628,995 - -0.6
628,995 - +3.0
629,092 - -3.2
629,092 - -1.2
629,092 - -3.8
629,094 - +0.4
629,094 - -0.1
629,094 - -0.6
629,094 - +0.8
629,094 - -2.8
629,130 + -2.2
629,131 - -0.4
629,131 - -2.2
629,131 - +2.2
629,131 - -3.0
629,135 - +0.0
629,135 - +1.1
629,508 + Psest_0575 0.83 +1.0

Or see this region's nucleotide sequence