Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3976

Experiment: RCH2 grown on a colony of ecoli

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of ecoli
4,141,880	+		Psest_3974	0.89	-2.1
4,141,881	-		Psest_3974	0.90	-0.5
4,141,881	-		Psest_3974	0.90	+0.4
4,141,952	+				+0.9
4,141,990	+				+2.6
4,141,990	+				-0.1
4,141,991	-				+2.5
4,141,991	-				-1.1
4,141,991	-				-1.4
4,141,991	-				+1.2
4,141,991	-				-2.5
4,141,991	-				+0.5
4,141,991	-				+2.3
4,142,097	-		Psest_3975	0.14	-1.6
4,142,097	-		Psest_3975	0.14	+0.4
4,142,097	-		Psest_3975	0.14	+0.3
4,142,097	-		Psest_3975	0.14	-4.2
4,142,165	+		Psest_3975	0.21	+0.3
4,142,165	+		Psest_3975	0.21	-2.1
4,142,165	+		Psest_3975	0.21	+0.4
4,142,165	+		Psest_3975	0.21	-0.1
4,142,165	+		Psest_3975	0.21	+1.1
4,142,165	+		Psest_3975	0.21	+0.7
4,142,165	+		Psest_3975	0.21	-3.6
4,142,165	+		Psest_3975	0.21	+0.3
4,142,165	+		Psest_3975	0.21	-3.5
4,142,165	+		Psest_3975	0.21	+2.6
4,142,165	+		Psest_3975	0.21	+1.3
4,142,165	+		Psest_3975	0.21	-2.6
4,142,165	+		Psest_3975	0.21	+0.2
4,142,165	+		Psest_3975	0.21	+3.3
4,142,166	-		Psest_3975	0.21	-0.4
4,142,166	-		Psest_3975	0.21	-0.2
4,142,166	-		Psest_3975	0.21	+0.2
4,142,166	-		Psest_3975	0.21	-2.6
4,142,166	-		Psest_3975	0.21	-1.7
4,142,202	+		Psest_3975	0.26	-1.9
4,142,203	-		Psest_3975	0.26	+0.1
4,142,449	+		Psest_3975	0.54	-2.9
4,142,449	+		Psest_3975	0.54	+0.1
4,142,449	+		Psest_3975	0.54	-2.9
4,142,449	+		Psest_3975	0.54	-1.1
4,142,450	-		Psest_3975	0.54	-0.2
4,142,450	-		Psest_3975	0.54	-2.1
4,142,450	-		Psest_3975	0.54	-0.7
4,142,450	-		Psest_3975	0.54	-0.2
4,142,450	-		Psest_3975	0.54	-2.6
4,142,483	+		Psest_3975	0.58	-3.6
4,142,483	+		Psest_3975	0.58	+0.3
4,142,483	+		Psest_3975	0.58	-1.0
4,142,483	+		Psest_3975	0.58	-2.2
4,142,484	-		Psest_3975	0.58	-1.3
4,142,484	-		Psest_3975	0.58	-1.4
4,142,518	+		Psest_3975	0.62	-0.4
4,142,518	+		Psest_3975	0.62	-0.6
4,142,518	+		Psest_3975	0.62	+3.6
4,142,518	+		Psest_3975	0.62	+0.0
4,142,519	-		Psest_3975	0.62	+3.1
4,142,519	-		Psest_3975	0.62	-0.1
4,142,801	+				+0.1
4,142,801	+				-0.9
4,142,801	+				+0.2
4,142,801	+				+0.4
4,142,801	+				-2.6
4,142,801	+				-2.4
4,142,801	+				-0.4
4,142,801	+				-0.9
4,142,801	+				+1.5
4,142,801	+				-0.9
4,142,801	+				+1.0
4,142,801	+				+1.3
4,142,801	+				+0.1
4,142,801	+				-0.2
4,142,801	+				+1.0
4,142,801	+				-1.4
4,142,801	+				+0.8
4,142,802	-				+0.4
4,142,802	-				-0.9
4,142,802	-				-0.4
4,142,802	-				-1.0
4,142,802	-				-1.2
4,142,802	-				+0.2
4,142,802	-				-2.7
4,142,802	-				+0.6
4,142,802	-				-0.8
4,142,802	-				-0.4
4,142,893	-				+0.1
4,143,147	+		Psest_3976	0.16	+0.7
4,143,147	+		Psest_3976	0.16	+1.0
4,143,147	+		Psest_3976	0.16	+1.3
4,143,148	-		Psest_3976	0.16	+0.7
4,143,505	+		Psest_3976	0.34	-3.2
4,143,505	+		Psest_3976	0.34	+2.2
4,143,539	-		Psest_3976	0.36	-2.9
4,143,539	-		Psest_3976	0.36	+1.5
4,143,539	-		Psest_3976	0.36	-1.9
4,143,602	+		Psest_3976	0.39	+1.1
4,143,602	+		Psest_3976	0.39	+1.4
4,143,796	+		Psest_3976	0.49	+0.1
4,143,796	+		Psest_3976	0.49	+0.4
4,143,796	+		Psest_3976	0.49	-1.1
4,143,796	+		Psest_3976	0.49	-0.5
4,143,797	-		Psest_3976	0.49	+0.5
4,143,797	-		Psest_3976	0.49	-0.6
4,143,797	-		Psest_3976	0.49	-2.2
4,143,797	-		Psest_3976	0.49	-0.3
4,143,797	-		Psest_3976	0.49	+2.3
4,143,797	-		Psest_3976	0.49	-3.8
4,144,085	+		Psest_3976	0.64	-0.8
4,144,085	+		Psest_3976	0.64	-0.7
4,144,086	-		Psest_3976	0.64	-0.8
4,144,086	-		Psest_3976	0.64	-0.4
4,144,086	-		Psest_3976	0.64	-2.4
4,144,146	+		Psest_3976	0.67	+2.3
4,144,146	+		Psest_3976	0.67	+0.3
4,144,147	-		Psest_3976	0.67	+0.4
4,144,147	-		Psest_3976	0.67	-1.9
4,144,147	-		Psest_3976	0.67	+1.7
4,144,147	-		Psest_3976	0.67	+3.1
4,144,147	-		Psest_3976	0.67	-1.7
4,144,148	+		Psest_3976	0.67	-1.0
4,144,156	+		Psest_3976	0.68	+1.5
4,144,156	+		Psest_3976	0.68	-2.2
4,144,156	+		Psest_3976	0.68	-2.7
4,144,157	-		Psest_3976	0.68	+0.6
4,144,157	-		Psest_3976	0.68	-1.6
4,144,157	-		Psest_3976	0.68	-1.9
4,144,157	-		Psest_3976	0.68	+0.9
4,144,272	+		Psest_3976	0.73	+2.1
4,144,272	+		Psest_3976	0.73	+0.3
4,144,272	+		Psest_3976	0.73	-0.0
4,144,273	-		Psest_3976	0.74	-0.9
4,144,273	-		Psest_3976	0.74	+1.9
4,144,273	-		Psest_3976	0.74	+2.2
4,144,273	-		Psest_3976	0.74	+0.7
4,144,376	-		Psest_3976	0.79	+0.7
4,144,376	-		Psest_3976	0.79	+0.6
4,144,964	+				+1.0
4,144,964	+				-0.3
4,144,969	+				-0.0
4,144,970	-				-0.4
4,145,016	+				+0.9
4,145,091	+				-1.1
4,145,111	-				+3.5
4,145,111	-				-1.3
4,145,111	-				+2.2
4,145,140	+				+0.2
4,145,141	-				+0.4
4,145,141	-				+0.4
4,145,145	-				+1.0
4,145,145	-				+0.5
4,145,145	-				+2.7
4,145,163	-				+0.0
4,145,191	+				-2.3
4,145,203	-				+1.6
4,145,203	-				+2.1
4,145,206	+				-1.9
4,145,269	+				-1.0
4,145,269	+				+0.1
4,145,270	-				+1.2
4,145,270	-				-0.1
4,145,270	-				+0.8
4,145,274	-				-0.8
4,145,276	-				-1.9
4,145,276	-				+1.7
4,145,283	+				+1.0
4,145,428	+				-0.7
4,145,428	+				-2.1
4,145,428	+				-1.8
4,145,429	-				+1.0
4,145,429	-				+1.4
4,145,438	+				-1.1
4,145,438	+				+0.9
4,145,438	+				-0.2
4,145,438	+				-3.0
4,145,438	+				+0.3
4,145,439	-				-1.4
4,145,439	-				-0.5
4,145,439	-				+0.3
4,145,459	+		Psest_3977	0.12	-0.1
4,145,459	+		Psest_3977	0.12	-1.6
4,145,459	+		Psest_3977	0.12	-0.1
4,145,459	+		Psest_3977	0.12	-0.1
4,145,459	+		Psest_3977	0.12	-0.9
4,145,459	+		Psest_3977	0.12	-2.1
4,145,459	+		Psest_3977	0.12	+0.6
4,145,459	+		Psest_3977	0.12	+0.0
4,145,459	+		Psest_3977	0.12	-2.3
4,145,459	+		Psest_3977	0.12	-2.5
4,145,460	-		Psest_3977	0.13	-1.1
4,145,460	-		Psest_3977	0.13	+3.9
4,145,460	-		Psest_3977	0.13	+0.8
4,145,460	-		Psest_3977	0.13	-2.1
4,145,460	-		Psest_3977	0.13	+1.7
4,145,460	-		Psest_3977	0.13	+0.1
4,145,460	-		Psest_3977	0.13	+1.2
4,145,492	+		Psest_3977	0.28	-3.3
4,145,492	+		Psest_3977	0.28	+3.3
4,145,493	-		Psest_3977	0.28	+0.5
4,145,496	-		Psest_3977	0.30	-0.1
4,145,738	+				+1.4
4,145,738	+				-1.1
4,145,738	+				+5.1
4,145,738	+				-0.6
4,145,738	+				-0.9
4,145,738	+				-3.3
4,145,738	+				-1.7
4,145,739	-				+1.6
4,145,739	-				-1.8
4,145,739	-				-1.5
4,145,739	-				+0.8
4,145,739	-				+0.2
4,145,739	-				+0.3
4,145,739	-				-1.4
4,145,739	-				-2.6
4,145,739	-				-0.6
4,145,739	-				-0.3